View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7105_high_1 (Length: 586)
Name: NF7105_high_1
Description: NF7105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7105_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 478; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 18 - 556
Target Start/End: Original strand, 25681352 - 25681910
Alignment:
| Q |
18 |
aaatccagacaaagaattaagaaaattaatggctgccattgtagagggatgggttggggagctaacaaagctcagagaaaaagttcttcccaacaagagc |
117 |
Q |
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| T |
25681352 |
aaatccagacaaagaattaagaaaattaatggctgccattgtagagggatgggttggggagctaacaaagctcagagaaaaagttcttcccaacaagagc |
25681451 |
T |
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| Q |
118 |
aagcctttgctttcaaaagccaaacatggagcagatgaaaacaacaagaagaacgttggtgttccaccaagagacacctctgttgcctctgactcttcaa |
217 |
Q |
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| T |
25681452 |
aagcctttgctttcaaaagccaaacatggagcagatcaaaacaacaagaagaacgttggtgttccaccaagagacacctctgttgcctctgactcttcaa |
25681551 |
T |
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| Q |
218 |
ctatgtcagaggcaaccgtatgtttgcttatggatcgatttgttccttggtgataatatttattcctagtccagtaacatgtgtatatattctagcttct |
317 |
Q |
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| T |
25681552 |
ctatgtcagaggcaaccgtgtgtttgcttatggatcgatttgttccttggtgataatatttattcctagtccagtaacatgtgtatatattctagcttct |
25681651 |
T |
|
| Q |
318 |
tgtgttttttgttgcaagattaattgagatgcatggtttgtattgtatatatacttgatcgatctatgtatgttacttttcatagtaatggaaatttacc |
417 |
Q |
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| T |
25681652 |
tgtgttttttgttgcaagattaattgagatgcatggtttgtattgtatatatacttgatcgatctatgtatgttacttttcatagtaatggaaatttact |
25681751 |
T |
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| Q |
418 |
tctcttgctaattgtttgtgcttgtttagattcataaacctaatagcttacagttttgcgtgaaaatgtgatgttcaatttattta-------------- |
503 |
Q |
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| T |
25681752 |
tctcttgctaattgtttgtgcttgtttagattcataaacctaatagcttgcagttttgcgtgaaaatgtgatgttcaatttatttatgtggttgttttta |
25681851 |
T |
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| Q |
504 |
------tgtgatgatcaaatttagtgatacacactctgcaagagtttccctatcagaag |
556 |
Q |
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| T |
25681852 |
gttcagtgtgatgatcaaatttagtgatacacactctgcaagagtttccctatcagaag |
25681910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 45 - 281
Target Start/End: Original strand, 25697991 - 25698218
Alignment:
| Q |
45 |
aatggctgccattgtagagggatgggttggggagctaacaaagctcagagaaaaagttcttcccaacaagagcaagcctttgctttcaaaagccaaacat |
144 |
Q |
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| T |
25697991 |
aatgggtgcaattgtagaggcatgggttggtaaactttcaaagctcagagaaaaagttcttcctatcagcagcaatcctttgttctcaaaatccaagcaa |
25698090 |
T |
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| Q |
145 |
ggagcagatgaaaacaacaagaagaacgttggtgttccaccaagagacacctctgttgcctctgactcttcaactatgtcagaggcaaccgtatgtttgc |
244 |
Q |
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| T |
25698091 |
gcaatagatcaaaacaacaaggacaacgttggtgttccccttagagacacctc---tgcctcacact------ctatgtcagagaaaactgtgtttttgc |
25698181 |
T |
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| Q |
245 |
ttatggatcgatttgttccttggtgataatatttatt |
281 |
Q |
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| T |
25698182 |
ttatggatcgatttgtcccttggtgatgatatatatt |
25698218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 332 - 403
Target Start/End: Original strand, 25698242 - 25698313
Alignment:
| Q |
332 |
caagattaattgagatgcatggtttgtattgtatatatacttgatcgatctatgtatgttacttttcatagt |
403 |
Q |
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| T |
25698242 |
caagattaattaagatgcatggtttttattgtatatatactcgatcgatctatgcattttaattttcatagt |
25698313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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