View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7105_high_7 (Length: 383)
Name: NF7105_high_7
Description: NF7105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7105_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 22 - 144
Target Start/End: Original strand, 42664940 - 42665062
Alignment:
| Q |
22 |
taagtataagataagataagttttatagacaaataaacctcgttgttccaacattatccttgatgacacaaaataagactctttgttacttccgagtttc |
121 |
Q |
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| T |
42664940 |
taagtataaggtaagataagttttatagacaaataaaccttgttgttccaacattatccttgatgacacaaaataagactgtttgttactttcgagtttc |
42665039 |
T |
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| Q |
122 |
aacaacaaaaattcttttgaaaa |
144 |
Q |
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| T |
42665040 |
aacaacaaaaattcttttgaaaa |
42665062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 218 - 340
Target Start/End: Original strand, 42666196 - 42666318
Alignment:
| Q |
218 |
gtgtgtcaatggtggaagcannnnnnngggtcgaagcatattcaactttcattttcattcattcaacaaatgaatcgagttaggnnnnnnngtttagagt |
317 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
42666196 |
gtgtgtcaatggtggaagcatttttttcggtcgaagcatattcaactttcattttcattcattcaccaaatgaatcgagttaggtttttttgtttagagt |
42666295 |
T |
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| Q |
318 |
gagtgaaactactcaagtcaaaa |
340 |
Q |
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|||||| |||||||||||||||| |
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| T |
42666296 |
gagtgagactactcaagtcaaaa |
42666318 |
T |
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