View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7105_low_11 (Length: 239)

Name: NF7105_low_11
Description: NF7105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7105_low_11
NF7105_low_11
[»] chr6 (31 HSPs)
chr6 (4-231)||(4592152-4592379)
chr6 (1-223)||(4563640-4563862)
chr6 (3-177)||(4585608-4585785)
chr6 (3-161)||(4613701-4613859)
chr6 (3-154)||(4570970-4571121)
chr6 (6-163)||(4579421-4579578)
chr6 (4-152)||(4480693-4480841)
chr6 (6-146)||(4504383-4504523)
chr6 (3-156)||(4557121-4557274)
chr6 (3-156)||(4560502-4560655)
chr6 (1-152)||(4515102-4515253)
chr6 (4-171)||(4516302-4516469)
chr6 (3-155)||(4574305-4574457)
chr6 (4-146)||(3171747-3171889)
chr6 (4-146)||(4490339-4490481)
chr6 (3-161)||(4598162-4598320)
chr6 (4-152)||(4617022-4617170)
chr6 (15-152)||(4492955-4493092)
chr6 (15-152)||(4505857-4505994)
chr6 (4-152)||(4601789-4601937)
chr6 (3-146)||(4267149-4267292)
chr6 (3-146)||(4469809-4469952)
chr6 (4-146)||(4622148-4622290)
chr6 (3-152)||(4461123-4461272)
chr6 (42-146)||(4392048-4392152)
chr6 (4-146)||(4625957-4626099)
chr6 (6-133)||(4568072-4568202)
chr6 (4-146)||(4299730-4299866)
chr6 (4-146)||(4256596-4256738)
chr6 (28-122)||(4260162-4260256)
chr6 (86-156)||(4606957-4607027)
[»] chr8 (3 HSPs)
chr8 (6-163)||(20863829-20863986)
chr8 (4-152)||(1674226-1674374)
chr8 (3-183)||(16686250-16686432)
[»] chr5 (2 HSPs)
chr5 (4-152)||(28000083-28000231)
chr5 (3-146)||(24103005-24103148)
[»] scaffold0288 (1 HSPs)
scaffold0288 (3-146)||(3702-3845)
[»] scaffold0477 (1 HSPs)
scaffold0477 (4-146)||(4670-4812)
[»] chr3 (1 HSPs)
chr3 (28-152)||(1281114-1281238)
[»] chr7 (1 HSPs)
chr7 (4-146)||(3086426-3086568)


Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 4592379 - 4592152
Alignment:
4 tcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgttc 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
4592379 tcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcagaggagaacacgagacctggaggttgttc 4592280  T
104 atatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaatcaaatttaagtaattttttatgcaaagcagttcaacaataattgattgatc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4592279 atatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaatcaaatttaagtaattttttatgcaaagcagttcaacaataattgattgatc 4592180  T
204 ttcccctattgaatttaagtgatgatgt 231  Q
    ||||||||||||||||||||||||||||    
4592179 ttcccctattgaatttaagtgatgatgt 4592152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4563862 - 4563640
Alignment:
1 ttgtcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttg 100  Q
    |||||||||||||||||   ||||||||||||||||||||| || |||||||||| |||||||||||||| | |||||| | ||||||| ||||||||||    
4563862 ttgtcaatgaattgatgtcaggagagaaaggaaagaagatgcggcaaaaggcaattgagttgaagaagaaagtggaggaaaacacgagagctggaggttg 4563763  T
101 ttcatatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaatcaaatttaagtaa-ttttttatgcaaagcagttcaacaataattgatt 199  Q
    |||||| ||||||||||||||| ||||||||||||| ||||||||| |||||| ||||||||||| ||||||||||||  ||||||||| |||||| |||    
4563762 ttcatacatgaacttggacaaagtgatcaaggaggttttgcttaaacaaaatc-aatttaagtaacttttttatgcaattcagttcaacgataattaatt 4563664  T
200 gatcttcccctattgaatttaagt 223  Q
    ||||||||||||||||||||||||    
4563663 gatcttcccctattgaatttaagt 4563640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 3 - 177
Target Start/End: Complemental strand, 4585785 - 4585608
Alignment:
3 gtcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgtt 102  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
4585785 gtcaatgaattgatggtgggagagaatggaaagaagatgaggcaaaaggcaatcgagttgaagaagaaggcggaggaggacacgagacctggaggttgtt 4585686  T
103 catatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaatcaaa--tttaagt-aattttttatgcaa 177  Q
    |||| || |||||||| ||| |||| |||||||| |||||||||||||||||||  | ||||| ||||||||||||||    
4585685 catacataaacttggaaaaagtgattaaggaggttttgcttaaataaaatcaaacctataagtgaattttttatgcaa 4585608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 4613701 - 4613859
Alignment:
3 gtcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgtt 102  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||| ||||||  ||||||||| ||||||||||    
4613701 gtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcagaggaggacacgagaccaggaggttgtt 4613800  T
103 catatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaatcaaatttaa 161  Q
    |||||||||||||||||||| ||||||| |||||| |||| ||| ||||||||| ||||    
4613801 catatatgaacttggacaaagtgatcaatgaggtgctgctgaaacaaaatcaaacttaa 4613859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 3 - 154
Target Start/End: Complemental strand, 4571121 - 4570970
Alignment:
3 gtcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgtt 102  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||   ||| ||| ||||||||||||||||||||  |||||||||||| |||||||    
4571121 gtcaatgaattgatggtgggagataaaggaaagaagatgaggaaaaatataatggagatgaagaagaaggcggaggaggacacgagacctggtggttgtt 4571022  T
103 catatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaatca 154  Q
    |||| ||||||||||| ||| |||| |||||||| |||||||||||||||||    
4571021 catacatgaacttggaaaaagtgattaaggaggttttgcttaaataaaatca 4570970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 6 - 163
Target Start/End: Complemental strand, 4579578 - 4579421
Alignment:
6 aatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgttcat 105  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||| |||||||  ||||||||||||||| |||||||    
4579578 aatgaattgatggtgggagagaaagcaaagaagatgaggcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcat 4579479  T
106 atatgaacttggacaaattgatcaaggaggtgttgcttaaataaaatcaaatttaagt 163  Q
    | ||||||||||| ||| |||| ||||||||||| || ||| |||||| || ||||||    
4579478 acatgaacttggagaaagtgattaaggaggtgttactcaaacaaaatcgaacttaagt 4579421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 4480841 - 4480693
Alignment:
4 tcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgttc 103  Q
    ||||||||||| ||||||||||||||||||||||||||| | ||||||| || ||||||||||||| ||| ||||||  ||| |||||||| ||||||||    
4480841 tcaatgaattgttggtgggagagaaaggaaagaagatgaagcaaaaggccatggagttgaagaagatggcagaggaggacacaagacctggtggttgttc 4480742  T
104 atatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaat 152  Q
    ||| ||||||||||||||| |||| |||||||| ||||||||| |||||    
4480741 atacatgaacttggacaaagtgattaaggaggtcttgcttaaacaaaat 4480693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 4504383 - 4504523
Alignment:
6 aatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgttcat 105  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| ||||||  ||| |||| ||| ||||||||||    
4504383 aatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccatggagttgaagaagaaggcagaggaggacacaagacttggtggttgttcat 4504482  T
106 atatgaacttggacaaattgatcaaggaggtgttgcttaaa 146  Q
    | ||||||||||||||| |||| ||||| || |||||||||    
4504483 acatgaacttggacaaagtgattaaggacgtcttgcttaaa 4504523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 3 - 156
Target Start/End: Complemental strand, 4557274 - 4557121
Alignment:
3 gtcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgtt 102  Q
    |||||||||||||||| ||| |||||||||||||||||| ||||||||  ||| ||| |||||| |||||||||||||  |||||||||||| |||||||    
4557274 gtcaatgaattgatggagggggagaaaggaaagaagatgtggaaaaagataattgagatgaagacgaaggcggaggaggacacgagacctggtggttgtt 4557175  T
103 catatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaatcaaa 156  Q
    |||| ||||| ||||| ||| |||| |||||||| ||||||||| |||||||||    
4557174 catacatgaatttggaaaaagtgattaaggaggttttgcttaaacaaaatcaaa 4557121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 3 - 156
Target Start/End: Complemental strand, 4560655 - 4560502
Alignment:
3 gtcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgtt 102  Q
    |||||||||||||||    |||| |||||||||||||||||| ||||||| || ||| ||||||| |||||||||| |  ||||||||||||||||||||    
4560655 gtcaatgaattgatgtcctgagataaaggaaagaagatgaggcaaaaggccatggagctgaagaaaaaggcggaggtgtacacgagacctggaggttgtt 4560556  T
103 catatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaatcaaa 156  Q
    |||| ||||||||||| ||| |||| |||||||||||||||||| |||||||||    
4560555 catacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaatcaaa 4560502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 4515102 - 4515253
Alignment:
1 ttgtcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttg 100  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||  || |||||||| |||||||| || |||  ||| |||| ||| || |     
4515102 ttgtcaatgaattgatggtgggagagaaaggaaataaaatgaggaaaaaggttatggagttgaaaaagaaggcagacgaggacactagacttggcgggtc 4515201  T
101 ttcatatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaat 152  Q
    ||||||  |||||||||||||| ||||||||||||||||||||||| |||||    
4515202 ttcatacttgaacttggacaaagtgatcaaggaggtgttgcttaaacaaaat 4515253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 171
Target Start/End: Complemental strand, 4516469 - 4516302
Alignment:
4 tcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgttc 103  Q
    |||||||||| ||||||||||| |||||||||||||||||| ||||||| || || |||||||||||||| ||||||  ||| ||||| || ||||||||    
4516469 tcaatgaattaatggtgggagataaaggaaagaagatgaggcaaaaggccatggaattgaagaagaaggcagaggaggacacaagaccaggtggttgttc 4516370  T
104 atatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaatcaaatttaagtaatttttt 171  Q
    |||| |||||||||| ||| |||| ||||||||| |||| ||| ||||| | ||| |||| |||||||    
4516369 atatgtgaacttggaaaaagtgattaaggaggtgctgctcaaacaaaattagattaaagtgatttttt 4516302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 155
Target Start/End: Complemental strand, 4574457 - 4574305
Alignment:
3 gtcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgtt 102  Q
    |||||||||||||||   ||||| |||||||||||||||||| |||| || || ||| |||||||||||| ||||| |  ||||||||||||||||||||    
4574457 gtcaatgaattgatgtccggagataaaggaaagaagatgaggcaaaaagccattgagctgaagaagaaggtggaggtggacacgagacctggaggttgtt 4574358  T
103 catatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaatcaa 155  Q
    |||| |  |||||||| ||| |||| |||||||||||||||||| ||||||||    
4574357 catacacaaacttggagaaagtgattaaggaggtgttgcttaaacaaaatcaa 4574305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 3171889 - 3171747
Alignment:
4 tcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgttc 103  Q
    |||| |||||||||||||||||||||||||||||||||||| ||| ||| || ||||||||||||||||| ||||||   || |||  ||| ||||||||    
3171889 tcaacgaattgatggtgggagagaaaggaaagaagatgaggcaaagggccatggagttgaagaagaaggcagaggaggatacaagatttggtggttgttc 3171790  T
104 atatatgaacttggacaaattgatcaaggaggtgttgcttaaa 146  Q
    ||| ||||||||||| ||| |||| |||||||| |||||||||    
3171789 atacatgaacttggataaagtgattaaggaggtcttgcttaaa 3171747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 4490339 - 4490481
Alignment:
4 tcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgttc 103  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| |  ||||||||||||||||| | ||||  ||||||||  || ||| ||||    
4490339 tcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggcgacggagttgaagaagaaggcagcggaggacacgagactcggtggtagttc 4490438  T
104 atatatgaacttggacaaattgatcaaggaggtgttgcttaaa 146  Q
    ||| ||||||||||||||| |||| ||||| ||  ||||||||    
4490439 atacatgaacttggacaaagtgattaaggatgtcatgcttaaa 4490481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 161
Target Start/End: Complemental strand, 4598320 - 4598162
Alignment:
3 gtcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgtt 102  Q
    ||||| |||||||||  |||||| ||||||||||| |||||| ||||| |||| || ||||||| |||||||||||||   ||||||| |||||||||||    
4598320 gtcaacgaattgatgtcgggagataaaggaaagaaaatgaggcaaaagacaattgatttgaagatgaaggcggaggaggaaacgagacttggaggttgtt 4598221  T
103 catatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaatcaaatttaa 161  Q
    |||| |||||||| || ||| |||| ||||||||||| |||||| | ||||||| ||||    
4598220 catacatgaacttagagaaagtgattaaggaggtgtttcttaaacagaatcaaacttaa 4598162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 4617170 - 4617022
Alignment:
4 tcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgttc 103  Q
    |||||||| |||| |  ||||| ||||||||||| |||| | ||||||| || ||||||||||||||||| ||||||| ||| ||||| || ||||||||    
4617170 tcaatgaagtgatagccggagataaaggaaagaaaatgaagcaaaaggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttc 4617071  T
104 atatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaat 152  Q
    ||| ||||||||| ||||| | || ||||| |||||||||||| |||||    
4617070 atacatgaacttgaacaaagttattaaggatgtgttgcttaaacaaaat 4617022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 4493092 - 4492955
Alignment:
15 atggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgttcatatatgaact 114  Q
    ||||| |||||||||||||| |||||||||| ||| || |  |||||||| |||||||| ||||||  |||   |||||| ||||||||||| |||||||    
4493092 atggttggagagaaaggaaacaagatgaggagaaaagccacggagttgaaaaagaaggcagaggaggacacagtacctggtggttgttcatacatgaact 4492993  T
115 tggacaaattgatcaaggaggtgttgcttaaataaaat 152  Q
    |||||||| |||||||||| || ||||||||| |||||    
4492992 tggacaaagtgatcaaggatgtcttgcttaaacaaaat 4492955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 4505994 - 4505857
Alignment:
15 atggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgttcatatatgaact 114  Q
    ||||| |||||||||||||| ||||||||||||||||  || |||||||| |||| |||  |||||   || |||||||| ||||||||||  |||||||    
4505994 atggttggagagaaaggaaacaagatgaggaaaaaggtcatggagttgaaaaagagggcaaaggaggatacaagacctggtggttgttcattcatgaact 4505895  T
115 tggacaaattgatcaaggaggtgttgcttaaataaaat 152  Q
    |||||||| | || |||||||||||||||||| |||||    
4505894 tggacaaagttattaaggaggtgttgcttaaacaaaat 4505857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 4601937 - 4601789
Alignment:
4 tcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgttc 103  Q
    |||||||| |||| |  ||||| ||||| |||||||||||| ||||||| || ||||||||||||| |||  |||||||||| ||||  || ||||||||    
4601937 tcaatgaagtgatagccggagataaaggcaagaagatgaggcaaaaggccatggagttgaagaagatggcaaaggagagcactagactaggtggttgttc 4601838  T
104 atatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaat 152  Q
    ||| | |||| |||||||| | || |||||||||||||||||| |||||    
4601837 atacaagaacctggacaaagttattaaggaggtgttgcttaaacaaaat 4601789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 146
Target Start/End: Original strand, 4267149 - 4267292
Alignment:
3 gtcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgtt 102  Q
    |||||||||||||||||||||||||||||||| | ||||| | |||| |   | |||||||||| |||||| || |||| ||| |||||||| |||| ||    
4267149 gtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaggaaggcagaagagaacacaagacctggtggttttt 4267248  T
103 catatatgaacttggacaaattgatcaaggaggtgttgcttaaa 146  Q
    |||| ||||||||||||||| | || ||||||||  ||||||||    
4267249 catacatgaacttggacaaagttattaaggaggtcatgcttaaa 4267292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 4469952 - 4469809
Alignment:
3 gtcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgtt 102  Q
    ||||||||||||||||| |||||||| ||||||||||||||| |||||   || ||||| |||||||||| |||||||   || ||||||||||||  ||    
4469952 gtcaatgaattgatggttggagagaatggaaagaagatgagggaaaagatcatggagttcaagaagaaggtggaggaggataccagacctggaggtgttt 4469853  T
103 catatatgaacttggacaaattgatcaaggaggtgttgcttaaa 146  Q
    |||| | ||||||||||||| | || ||||| || |||||||||    
4469852 catacaagaacttggacaaagtcattaaggatgtcttgcttaaa 4469809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 4622290 - 4622148
Alignment:
4 tcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgttc 103  Q
    ||||||||||||||  |||||| |||||||||||||||||  ||||||| || ||||||||| ||||||| || ||||  || || ||||| ||||||||    
4622290 tcaatgaattgatgtcgggagataaaggaaagaagatgagacaaaaggccatggagttgaaggagaaggcagatgagacgaccagccctggtggttgttc 4622191  T
104 atatatgaacttggacaaattgatcaaggaggtgttgcttaaa 146  Q
    ||| |  |||||||||||| | || ||||||||  ||||||||    
4622190 atacaacaacttggacaaagttattaaggaggtcatgcttaaa 4622148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 152
Target Start/End: Complemental strand, 4461272 - 4461123
Alignment:
3 gtcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgtt 102  Q
    ||||| ||||||||||| |||||||  ||||||||||||||| ||||||  || || || |||||||||| |||||||   || ||||||||||||  ||    
4461272 gtcaacgaattgatggttggagagattggaaagaagatgaggcaaaaggtcatggaattcaagaagaaggtggaggaggataccagacctggaggtgttt 4461173  T
103 catatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaat 152  Q
    |||| | ||||||||||||| | || ||||| || ||||||||| |||||    
4461172 catacaagaacttggacaaagtcattaaggatgtcttgcttaaacaaaat 4461123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 4392048 - 4392152
Alignment:
42 aggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgttcatatatgaacttggacaaattgatcaaggaggtgttgc 141  Q
    ||||||||||| ||||||||||||||||||||  |||||  |||  ||||||| |||| |||||  ||||||||||||||| |||| |||||||| ||||    
4392048 aggaaaaaggcgatcgagttgaagaagaaggcaaaggaggacacatgacctggtggttcttcattcatgaacttggacaaactgattaaggaggtcttgc 4392147  T
142 ttaaa 146  Q
    |||||    
4392148 ttaaa 4392152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 4626099 - 4625957
Alignment:
4 tcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgttc 103  Q
    |||||| ||||||||  ||||| || ||||||||||||||| ||||||| || ||||||||||||||||| ||||||| ||  || || || ||||||||    
4626099 tcaatgcattgatggcaggagataacggaaagaagatgaggcaaaaggccatggagttgaagaagaaggcagaggagaacattagtcccggtggttgttc 4626000  T
104 atatatgaacttggacaaattgatcaaggaggtgttgcttaaa 146  Q
    ||| |||||  |||| ||| |||| || || || |||||||||    
4625999 atacatgaatatggataaactgattaatgatgtcttgcttaaa 4625957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 133
Target Start/End: Complemental strand, 4568202 - 4568072
Alignment:
6 aatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaag---gcggaggagagcacgagacctggaggttgtt 102  Q
    |||||||| ||||||||| |||||||||| ||||||||| |||||||  | |||||||||||||||   || ||| ||  ||| |||||||| | || ||    
4568202 aatgaattaatggtgggacagaaaggaaaaaagatgaggcaaaaggccgtggagttgaagaagaagaaggcagagaaggacacaagacctggtgattctt 4568103  T
103 catatatgaacttggacaaattgatcaagga 133  Q
    |||| ||||||||||||||| |||| |||||    
4568102 catacatgaacttggacaaagtgattaagga 4568072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 4299730 - 4299866
Alignment:
4 tcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgttc 103  Q
    ||||||||||||||||||||||||||||| | ||||||||  |||||||||  |||||      |||||| ||||||| ||| |  || || ||||||||    
4299730 tcaatgaattgatggtgggagagaaaggagataagatgagacaaaaggcaagggagtt------gaaggcagaggagaacactaatccaggtggttgttc 4299823  T
104 atatatgaacttggacaaattgatcaaggaggtgttgcttaaa 146  Q
     || ||||||||||||||| | || ||||||||  ||||||||    
4299824 gtacatgaacttggacaaagttattaaggaggttctgcttaaa 4299866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 4256596 - 4256738
Alignment:
4 tcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgttc 103  Q
    ||||||||||||||  |||||| |||||||||||||||||| ||||||  || || |||||||||||| | ||| ||| ||| || || |  |||  |||    
4256596 tcaatgaattgatgtcgggagaaaaaggaaagaagatgaggcaaaaggtcatggaattgaagaagaagacagagaagaacaccagcccagctggtcattc 4256695  T
104 atatatgaacttggacaaattgatcaaggaggtgttgcttaaa 146  Q
    ||  ||||||||||||||| | || ||||||||  ||||||||    
4256696 attgatgaacttggacaaagttattaaggaggtcatgcttaaa 4256738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 4260162 - 4260256
Alignment:
28 aaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgttcatatatgaacttggacaaa 122  Q
    ||||||||||||||||| ||||||  || |||||||||| |||||| ||||||| ||| || ||    |||| |||||  |||||||||||||||    
4260162 aaggaaagaagatgaggcaaaaggtcatggagttgaagaggaaggcagaggagaacaccagtccatctggttattcattgatgaacttggacaaa 4260256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 156
Target Start/End: Original strand, 4606957 - 4607027
Alignment:
86 gagacctggaggttgttcatatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaatcaaa 156  Q
    |||||| || |||| |||||| ||||||||||| ||| |||| ||| |||| ||||||||| |||||||||    
4606957 gagaccaggtggtttttcatacatgaacttggaaaaagtgattaagaaggttttgcttaaacaaaatcaaa 4607027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 6 - 163
Target Start/End: Original strand, 20863829 - 20863986
Alignment:
6 aatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgttcat 105  Q
    |||||||||||||||||||||||||||| || ||||||| ||||| |||  ||||||||||||||||| ||||||  ||| ||||| | |||| ||||||    
20863829 aatgaattgatggtgggagagaaaggaaggaggatgaggcaaaagacaaatgagttgaagaagaaggcagaggaggacacaagaccggaaggtggttcat 20863928  T
106 atatgaacttggacaaattgatcaaggaggtgttgcttaaataaaatcaaatttaagt 163  Q
    ||||||||||||||||| |||| |||||||||||||||||| ||||||||| ||||||    
20863929 atatgaacttggacaaagtgattaaggaggtgttgcttaaacaaaatcaaacttaagt 20863986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 1674374 - 1674226
Alignment:
4 tcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgttc 103  Q
    ||||||||||||||||||||||||| ||||| ||||||||| ||||||| || || |||||||||||||| ||||||| ||| ||||| || ||||||||    
1674374 tcaatgaattgatggtgggagagaatggaaaaaagatgaggcaaaaggccatggaattgaagaagaaggcagaggagaacactagaccaggtggttgttc 1674275  T
104 atatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaat 152  Q
    ||| ||||||||||||||| |||| ||||| |||||||||||| |||||    
1674274 atacatgaacttggacaaagtgattaaggaagtgttgcttaaacaaaat 1674226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 183
Target Start/End: Original strand, 16686250 - 16686432
Alignment:
3 gtcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgtt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||  || | | ||||| ||| ||   | |||||||||| |||||||    
16686250 gtcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaagataattgaactgcaaatgaaggtggacgaagacccgagacctggtggttgtt 16686349  T
103 catatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaatcaaatttaagtaa--ttttttatgcaaagcagt 183  Q
    |||| ||||||||||| ||| |||| | |||||| ||||||||| |||||||||  ||||| |  |||||||||||| |||||    
16686350 catacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaacctaagtgactttttttatgcaatgcagt 16686432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 28000083 - 28000231
Alignment:
4 tcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgttc 103  Q
    ||||||||||||||||||||||||| ||||| ||||||||| ||||||| || ||||||||||| ||||| ||||||| ||| ||||| || ||||||||    
28000083 tcaatgaattgatggtgggagagaatggaaaaaagatgaggcaaaaggccatggagttgaagaaaaaggcagaggagaacactagaccaggtggttgttc 28000182  T
104 atatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaat 152  Q
    ||| ||||||||||||||| |||| ||||| |||||| ||||| |||||    
28000183 atacatgaacttggacaaagtgattaaggaagtgttgtttaaacaaaat 28000231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 24103148 - 24103005
Alignment:
3 gtcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgtt 102  Q
    |||||||||||||||||||||||||| ||||||| ||||| | ||||||   | ||||| ||||||||||| || |||| ||| ||| |||| |||| ||    
24103148 gtcaatgaattgatggtgggagagaacggaaagacgatgaagcaaaaggtcttggagttcaagaagaaggcagaagagaacacaagatctggtggttttt 24103049  T
103 catatatgaacttggacaaattgatcaaggaggtgttgcttaaa 146  Q
    |||| ||||||||||||||| | || ||||||||  ||||||||    
24103048 catacatgaacttggacaaagttattaaggaggtcatgcttaaa 24103005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 3 - 146
Target Start/End: Original strand, 3702 - 3845
Alignment:
3 gtcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgtt 102  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||  | ||||| ||||||||||| ||||||| ||| ||||| || ||| |||    
3702 gtcaatgaattgacggtgggagagaaaggaaagaagatgaggcaaaaggccgtggagttaaagaagaaggcagaggagaacactagaccaggtggtcgtt 3801  T
103 catatatgaacttggacaaattgatcaaggaggtgttgcttaaa 146  Q
    |||| |||||| |||||||| | || |||||||| |||||||||    
3802 catacatgaacctggacaaagttattaaggaggttttgcttaaa 3845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 4670 - 4812
Alignment:
4 tcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgttc 103  Q
    ||||||||||||||  |||||| ||||||| |||||||||| ||||||| || ||||||||||||||||| ||||||| ||| ||  |||| || |||||    
4670 tcaatgaattgatgtcgggagataaaggaatgaagatgaggcaaaaggccatggagttgaagaagaaggcagaggagaacaccagttctggtggctgttc 4769  T
104 atatatgaacttggacaaattgatcaaggaggtgttgcttaaa 146  Q
    ||| ||||||||||||||| |||| ||||||||  ||||||||    
4770 atacatgaacttggacaaagtgattaaggaggtcatgcttaaa 4812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 152
Target Start/End: Complemental strand, 1281238 - 1281114
Alignment:
28 aaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgttcatatatgaacttggacaaattgat 127  Q
    |||||||||| |||||  ||||||| || || |||||||||  ||||||||||| ||| ||||| || ||||||||||| |||||||| |||||| ||||    
1281238 aaggaaagaatatgagagaaaaggccatggaattgaagaaggcggcggaggagaacactagaccgggtggttgttcatacatgaacttcgacaaagtgat 1281139  T
128 caaggaggtgttgcttaaataaaat 152  Q
     |||||  ||||||||||| |||||    
1281138 taaggaaatgttgcttaaacaaaat 1281114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 3086568 - 3086426
Alignment:
4 tcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcggaggagagcacgagacctggaggttgttc 103  Q
    |||||||||||||||||||||| |||||||||||||||||| |||| |     ||||| |||||||| || || |||| ||| ||    || ||||||||    
3086568 tcaatgaattgatggtgggagataaaggaaagaagatgaggcaaaatgtcgcagagttaaagaagaaagcagaagagaacaccagtatcggtggttgttc 3086469  T
104 atatatgaacttggacaaattgatcaaggaggtgttgcttaaa 146  Q
    ||| ||||||||||||||| | || |||||||| |||||||||    
3086468 atacatgaacttggacaaagttattaaggaggtcttgcttaaa 3086426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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