View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7105_low_2 (Length: 531)
Name: NF7105_low_2
Description: NF7105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7105_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 297
Target Start/End: Complemental strand, 36193012 - 36192723
Alignment:
| Q |
16 |
cagataattgattggcgtgatactatgagtgatgaacttttgggcagactgtgacagtgttaacaatatctgttatttgttataccagatgtagagtcca |
115 |
Q |
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| T |
36193012 |
cagataattcattggcatgatattatgagtgatgaatttttgggcagactgtgactgtgtttacaatgtctgttatttgttataccagatgtagagtcca |
36192913 |
T |
|
| Q |
116 |
tcttcactattatctgcaatcttgttacgaagactgagaattcagatgaagtcatggagattgtgaaagttataactgcaaaattagttcagcagccaaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36192912 |
tcttcactattatctgcaatcttgttacgaagactgagaatccagatgaagtcatggagattgtgaaagttataactgcaaaattagttcagcagccaaa |
36192813 |
T |
|
| Q |
216 |
tgaaaagcctgcggtgcgattgaagatgtaatattacatcctacctggtttt--------gaaaatgcttgccactgtgactacttattt |
297 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
36192812 |
tgaaaagcctgcggtgcgattgaaaatgtaatattacatcctacttggttttgaaattttgaaaatgcttgccactgtgactacttattt |
36192723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 297 - 420
Target Start/End: Complemental strand, 36192592 - 36192467
Alignment:
| Q |
297 |
taccttcattcaaaaagatcgatagctcctttaaagagtggaaaattgggacaccagaagagagagagctgtttct--ccatctctaatgttttgaagga |
394 |
Q |
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||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
36192592 |
taccttcattcaaaaagatcgatagcttcttgaaagagtggaaaattgggacaccggaacagagagagctgtttctcaccatctctaatgttttgaagga |
36192493 |
T |
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| Q |
395 |
taacaaaaggtatagcacatagttca |
420 |
Q |
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| T |
36192492 |
aaacaaaaggtatagcacatagttca |
36192467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 424 - 521
Target Start/End: Complemental strand, 36192430 - 36192332
Alignment:
| Q |
424 |
cttctctttggagtaggaataagaatataacataagtttattg-catcagtctcactacccattcggtcagtagtcatatatccacacctcaatctctg |
521 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36192430 |
cttctctttggagtaggaattagaatataacataagtttattgtcatcagtctcactacccattcggtcagtaatcatatatccacacctcaatctctg |
36192332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 5054482 - 5054766
Alignment:
| Q |
16 |
cagataattgattggcgtgatactatgagtgatgaacttttgggcagactgtgacagtgttaacaatatctgttatttgttataccagatgtagagtcca |
115 |
Q |
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|||||||||||||||| || || || |||||||||| ||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5054482 |
cagataattgattggcatggtaatacgagtgatgaaattttgggcagaatgtgac--tgtttacaatatctgttatttgttataccagatgtagagtcca |
5054579 |
T |
|
| Q |
116 |
tcttcactattatctgcaatcttgttacgaagactgagaattcagatgaagtcatggagattgtgaaagttataactgcaaaattagttcagcagccaaa |
215 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5054580 |
tcttcactattgtctgcaatcttgttacgaagactgagaatccagatgaagtcatggagattgtgaaagttataactgcaaaattagttcagcagccaaa |
5054679 |
T |
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| Q |
216 |
tgaaaagcctgcggtgcgattgaagatgtaatattacatcctacctgg--------ttttgaaaatgcttgccactgtgactactta |
294 |
Q |
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| T |
5054680 |
tgaaaagcctgcggtgcgattgaagatgtaatattacatcctacttggttttgaaattttgaaaatgcttgccactgtgactactta |
5054766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 297 - 417
Target Start/End: Original strand, 5054901 - 5055023
Alignment:
| Q |
297 |
taccttcattcaaaaagatcgatagctcctttaaagagtggaaaattgggacaccagaagagagagagctgtttct--ccatctctaatgttttgaagga |
394 |
Q |
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||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
5054901 |
taccttcattcaaaaagattgatagcttcttgaaagagtggaaaattgggacaccagaacagagagagctgtttctcaccatctctaatgttttgaagga |
5055000 |
T |
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| Q |
395 |
taacaaaaggtatagcacatagt |
417 |
Q |
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| T |
5055001 |
aaacaaaaggtatagcacatagt |
5055023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 424 - 521
Target Start/End: Original strand, 5055063 - 5055160
Alignment:
| Q |
424 |
cttctctttggagtaggaataagaatataacataagtttattg-catcagtctcactacccattcggtcagtagtcatatatccacacctcaatctctg |
521 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||| |||||| ||||||||||||||||| ||||||||| |
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| T |
5055063 |
cttctctttggagtaggaataagaatataacataag-ttattgtcatcagtctcactacctatttggtcaggagtcatatatccacaccacaatctctg |
5055160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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