View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7105_low_3 (Length: 481)
Name: NF7105_low_3
Description: NF7105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7105_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 42664971 - 42664518
Alignment:
| Q |
1 |
ttgtctataaatcttatcttatcttatacttatagatcataaaatatttaaggaagtcttgcaataatgtaaaatcgagtcaatctcagtaatacagtat |
100 |
Q |
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| T |
42664971 |
ttgtctataaaacttatcttaccttatacttatagttcataaaatattcaaggaagtcttacaataatgtaaaatcgagtcaatcttagtaatatagtat |
42664872 |
T |
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| Q |
101 |
taatgtctggtgatgtgatttactgctttgcaatttaatttgattgtaaatcgtcgaaaaccttattcttgtaaccaatttatggtgtttgtgaaactcg |
200 |
Q |
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| T |
42664871 |
tagtgtctggtgatgtgatttactgctttgcaatttagtttggtcgtaaatcgtcgaaaactttattcttgtaaccaatttatgatgtttgcgaaactcg |
42664772 |
T |
|
| Q |
201 |
ttgattcaacttcttttggagatagacattgttgtttatgtaatgtctttgctcggatagattcttctctttcgatatcgatacacattcctgaatcaaa |
300 |
Q |
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| T |
42664771 |
ttgattcagcttcttttggagat------tgttgtttatgtaatgtctttgctcggatagattcttctctttcgatatggatacacattcctgtatcaaa |
42664678 |
T |
|
| Q |
301 |
attgttatgttgatggacaaaagttgcatcaatattgcacttcaaagtttcattctccgatatttccatccttgatcaactattcatgtgtcagtatttt |
400 |
Q |
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| T |
42664677 |
attgttatgttgatggacaaaagttgcatcaatattgcacttcaaagtttcattctccgatttttccattcttgatcaactattcctgtgtcagtatttt |
42664578 |
T |
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| Q |
401 |
gcatagtagaaaaccatctaattaactcgagttcattttgcaacaattctcatgaagtatatac |
464 |
Q |
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| T |
42664577 |
gtatagtcgaaaaccatc----taactcgagttcattttgcaacaattctcatgaagtatatac |
42664518 |
T |
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