View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7105_low_4 (Length: 400)
Name: NF7105_low_4
Description: NF7105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7105_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 11 - 384
Target Start/End: Complemental strand, 626903 - 626527
Alignment:
| Q |
11 |
agaatataactcctaaaaaaccttaatcttgcattatgacataattaaccactaatttacatcaaatttcttgaattagtcagggatatttcctcaatcc |
110 |
Q |
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| T |
626903 |
agaatataactcctaaaaaaccttaatcttgcattatgacataattaaccactaatttacatcaaatttcttgaattagtcagggatatttcctcaatcc |
626804 |
T |
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| Q |
111 |
tcaaaccccaaaatgtaacagaaatggtat---atatcagcatcaaaatcataactgatcataagctatttctgccatgtgcattaaaggcttaaagcaa |
207 |
Q |
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| T |
626803 |
tcaaaccccaaaatgtaacagaaattgtattatatatcagcatcaaaatcataactgatcataagctatttctgccatgtgcattaaaggcttaaagcaa |
626704 |
T |
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| Q |
208 |
catccttaagataagtgaacatcatgtcattagtttcttgctgtaaagtttgtcttttatgtgttgccaggctctttctcagttcttaggaccatcatac |
307 |
Q |
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| T |
626703 |
catccttaagataagtgaacatcatgtcattagtttcttgctgtaaagtttgtcttttatgtgttgccaggctctttctcagttcttaggaccatcatac |
626604 |
T |
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| Q |
308 |
caaatacagcatgtaatttatgttgtattgtacatggtcccctttcattttcaacacgtatatcacacaaatatgct |
384 |
Q |
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| T |
626603 |
caaatacagcatgtaatttatgttgtattgtacatggtcccctttcattttcaacacgtatatcacacaaatatgct |
626527 |
T |
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