View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7105_low_5 (Length: 397)
Name: NF7105_low_5
Description: NF7105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7105_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 264 - 379
Target Start/End: Original strand, 32943273 - 32943388
Alignment:
| Q |
264 |
ttatttctacacgtgtaggttaatattactggtccaaataagcccaattccaaaattcgtatcgaggatctgaaaattggagctgagcaagtctgtaaaa |
363 |
Q |
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|||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32943273 |
ttatttgtacacgtgtaggttaatattgctgatccaaataagcccaattccaaaattcgtatcgaggatctgaaaactggagctgagcaagtctgtaaaa |
32943372 |
T |
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| Q |
364 |
caaaatataaggatgc |
379 |
Q |
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|||||||||||||||| |
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| T |
32943373 |
caaaatataaggatgc |
32943388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 264 - 379
Target Start/End: Original strand, 32950454 - 32950569
Alignment:
| Q |
264 |
ttatttctacacgtgtaggttaatattactggtccaaataagcccaattccaaaattcgtatcgaggatctgaaaattggagctgagcaagtctgtaaaa |
363 |
Q |
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|||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32950454 |
ttatttgtacacgtgtaggttaatattgctgatccaaataagcccaattccaaaattcgtatcgaggatctgaaaactggagctgagcaagtctgtaaaa |
32950553 |
T |
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| Q |
364 |
caaaatataaggatgc |
379 |
Q |
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|||||||||||||||| |
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| T |
32950554 |
caaaatataaggatgc |
32950569 |
T |
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