View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7106_low_2 (Length: 363)
Name: NF7106_low_2
Description: NF7106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7106_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 6 - 347
Target Start/End: Complemental strand, 31214753 - 31214412
Alignment:
| Q |
6 |
cgaagaatatctccaattacttccatcgagttgttgttgnnnnnnncgaaaaagaaattgttatgtaatatgtgaagtgaagaaaagggaatataataaa |
105 |
Q |
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| T |
31214753 |
cgaagaaaatctccaattacttccatcgagttgttgttgtttttttggaaaaagaaattgttatgtaatatgtgaagtgaagaaaagggaatataataaa |
31214654 |
T |
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| Q |
106 |
ttgtgatgtaggtgtggcttttgttgaaatgaaatgaaatgtgcaacaagtttagttagggggttgatttgtgaatgtgtgtgatatttgatttgatttg |
205 |
Q |
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| T |
31214653 |
ttgtgatgtaggtgtggcttttgttgaaatgaaatgaaatgtgcaacaagtttagttagggggttgatttgtgaatgtgtgtgatatttgatttgatttg |
31214554 |
T |
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| Q |
206 |
gtttcaatgcgtatattaaacttttttcaattcaattggtatggtttggagaattgcatttttgatgatatcatgattcgatcttacattgcattcgtta |
305 |
Q |
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| T |
31214553 |
gtttcaatgcgtatattaaacttttttcaattcaattggtatggtttggagaattgcatttttgatgatatcatgattcgatcttacattgcattcgtta |
31214454 |
T |
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| Q |
306 |
gttcatggcaggacagacaatgccgacacagacatgtggtag |
347 |
Q |
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| T |
31214453 |
gttcatggtaggacagacaatgccgacacggacatgtggtag |
31214412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 6 - 324
Target Start/End: Original strand, 30499073 - 30499388
Alignment:
| Q |
6 |
cgaagaatatctccaattacttccatcgagttgttgttgnnnnnnncgaaaaagaaattgttatgtaatatgtgaagtgaagaaaagggaatataataaa |
105 |
Q |
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| T |
30499073 |
cgaagaaaatctccaattacttccatagagtagttgttgtttttttcgaaaaagaaattgtaatgtaatatatgaagtgaagaaaagggaatataataaa |
30499172 |
T |
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| Q |
106 |
ttgtgatgtaggtgtggcttttgttgaaatgaaatgaaatgtgcaacaagtttagttagggggttgatttgtgaatgtgtgtgatatttgatttgatttg |
205 |
Q |
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| T |
30499173 |
ttgtgatgtaggtgtggcttttgttgaaatgaaatgaaatgtgcaag----ttggttagagggttgaattgtgaatgtgtgtgatatttgatttgattt- |
30499267 |
T |
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| Q |
206 |
gtttcaatgcgtatattaaactttttt-caattcaattggtatggtttggagaattgcatttttgatgatatcatgattcgatc-----ttacattgcat |
299 |
Q |
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| T |
30499268 |
----caatgcgtataataaactttttttcatttcaattggtaaggtttggagaattgcatttttgatgatatcatgatttgatcttacattacattgcat |
30499363 |
T |
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| Q |
300 |
tcgttagttcatggcaggacagaca |
324 |
Q |
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| T |
30499364 |
tcgttagttcatggtaggacagaca |
30499388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 286 - 325
Target Start/End: Original strand, 31214870 - 31214909
Alignment:
| Q |
286 |
atcttacattgcattcgttagttcatggcaggacagacaa |
325 |
Q |
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| T |
31214870 |
atcttacattgcattcgttagttcatggtaggacagacaa |
31214909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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