View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7106_low_4 (Length: 215)

Name: NF7106_low_4
Description: NF7106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7106_low_4
NF7106_low_4
[»] scaffold0029 (1 HSPs)
scaffold0029 (92-211)||(111738-111857)
[»] chr7 (8 HSPs)
chr7 (92-211)||(15168032-15168151)
chr7 (92-211)||(18873217-18873336)
chr7 (92-211)||(10895871-10895989)
chr7 (95-215)||(12709918-12710038)
chr7 (95-215)||(13122989-13123109)
chr7 (92-215)||(13743566-13743689)
chr7 (92-211)||(14422841-14422959)
chr7 (112-211)||(16009454-16009552)
[»] chr6 (8 HSPs)
chr6 (92-211)||(23057795-23057914)
chr6 (92-214)||(29614224-29614345)
chr6 (112-211)||(10986261-10986359)
chr6 (112-211)||(23839075-23839173)
chr6 (92-211)||(4477714-4477832)
chr6 (94-208)||(18800296-18800409)
chr6 (92-209)||(21565294-21565410)
chr6 (158-214)||(930172-930227)
[»] chr5 (4 HSPs)
chr5 (92-211)||(22750998-22751117)
chr5 (112-215)||(28370130-28370232)
chr5 (112-215)||(38144612-38144714)
chr5 (112-211)||(19512263-19512361)
[»] chr3 (7 HSPs)
chr3 (92-211)||(14762837-14762956)
chr3 (92-211)||(38310879-38310998)
chr3 (92-211)||(20247868-20247987)
chr3 (97-211)||(24192817-24192931)
chr3 (112-215)||(9534205-9534307)
chr3 (112-211)||(23370586-23370684)
chr3 (112-209)||(55499185-55499281)
[»] scaffold0026 (2 HSPs)
scaffold0026 (92-215)||(11926-12049)
scaffold0026 (112-215)||(111563-111665)
[»] scaffold1773 (1 HSPs)
scaffold1773 (92-215)||(1036-1158)
[»] scaffold0006 (1 HSPs)
scaffold0006 (92-215)||(50037-50159)
[»] chr4 (2 HSPs)
chr4 (92-215)||(8045907-8046030)
chr4 (92-214)||(11847964-11848086)
[»] scaffold0025 (1 HSPs)
scaffold0025 (92-211)||(14476-14595)
[»] scaffold0924 (1 HSPs)
scaffold0924 (92-215)||(827-949)
[»] scaffold0117 (2 HSPs)
scaffold0117 (92-215)||(1974-2095)
scaffold0117 (92-215)||(8651-8772)
[»] chr8 (5 HSPs)
chr8 (112-215)||(44477500-44477602)
chr8 (112-215)||(44492658-44492760)
chr8 (111-215)||(23866490-23866595)
chr8 (112-211)||(8727813-8727911)
chr8 (112-199)||(27940946-27941032)
[»] chr2 (7 HSPs)
chr2 (112-215)||(6483595-6483697)
chr2 (112-215)||(6487062-6487164)
chr2 (92-211)||(19661533-19661651)
chr2 (112-210)||(23878885-23878982)
chr2 (92-209)||(23089137-23089253)
chr2 (112-209)||(23101545-23101641)
chr2 (122-215)||(26583715-26583807)
[»] scaffold0058 (1 HSPs)
scaffold0058 (92-215)||(149-271)
[»] chr1 (1 HSPs)
chr1 (112-211)||(20437104-20437202)
[»] scaffold0553 (1 HSPs)
scaffold0553 (112-211)||(10276-10374)
[»] scaffold0544 (1 HSPs)
scaffold0544 (112-211)||(1606-1704)
[»] scaffold0090 (1 HSPs)
scaffold0090 (93-215)||(18026-18148)
[»] scaffold0476 (1 HSPs)
scaffold0476 (94-209)||(3375-3490)
[»] scaffold0247 (1 HSPs)
scaffold0247 (113-208)||(11219-11313)
[»] scaffold0077 (1 HSPs)
scaffold0077 (112-209)||(3704-3800)
[»] scaffold0634 (1 HSPs)
scaffold0634 (92-131)||(3519-3558)
[»] scaffold0456 (2 HSPs)
scaffold0456 (92-135)||(846-889)
scaffold0456 (92-135)||(7991-8034)


Alignment Details
Target: scaffold0029 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 111738 - 111857
Alignment:
Q  92 tatgatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| ||||||||||||||||||| |    
T  111738 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatca 111837  T
Q  192 aaccctaaccctcaatttat 211  Q
    ||||||||||||||||||||    
T  111838 aaccctaaccctcaatttat 111857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 15168032 - 15168151
Alignment:
Q  92 tatgatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| ||||||||||||||||||| |    
T  15168032 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatca 15168131  T
Q  192 aaccctaaccctcaatttat 211  Q
    ||||||||||||||||||||    
T  15168132 aaccctaaccctcaatttat 15168151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 18873217 - 18873336
Alignment:
Q  92 tatgatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| ||||||||||||||||||| |    
T  18873217 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatca 18873316  T
Q  192 aaccctaaccctcaatttat 211  Q
    ||||||||||||||||||||    
T  18873317 aaccctaaccctcaatttat 18873336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 10895989 - 10895871
Alignment:
Q  92 tatgatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| ||||| |||||| ||||||||||||| |    
T  10895989 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagagaattaacatgatcaataccc-attcccctcagaatcatcatca 10895891  T
Q  192 aaccctaaccctcaatttat 211  Q
    ||||||||||| ||||||||    
T  10895890 aaccctaacccacaatttat 10895871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 12710038 - 12709918
Alignment:
Q  95 gatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagg-gaattaacacgatcattacccaattcccttcagaatcatcattaaa 193  Q
    |||||||||| |||||| ||||||||||  |||||||||||||| ||||||   ||||||||| |||||||||||| ||| ||||| ||||||||| |||    
T  12710038 gatcacagcaacaacaa-gattaagtttatattctgaacattatattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaa 12709940  T
Q  194 ccctaaccctcaatttattttc 215  Q
    ||||||||||||||||||||||    
T  12709939 ccctaaccctcaatttattttc 12709918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 13123109 - 13122989
Alignment:
Q  95 gatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagg-gaattaacacgatcattacccaattcccttcagaatcatcattaaa 193  Q
    |||||||||| |||||| ||||||||||  |||||||||||||| ||||||   ||||||||| |||||||||||| ||| ||||| ||||||||| |||    
T  13123109 gatcacagcaacaacaa-gattaagtttatattctgaacattatattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaa 13123011  T
Q  194 ccctaaccctcaatttattttc 215  Q
    ||||||||||||||||||||||    
T  13123010 ccctaaccctcaatttattttc 13122989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 13743566 - 13743689
Alignment:
Q  92 tatgatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 191  Q
    |||||||||||||  |||| ||||||||| |||| ||||||||  ||  ||||||  |||||||| |||||||||||| ||| ||||| ||||||||| |    
T  13743566 tatgatcacagcaataacatagattaagtcttcaatctgaacagcataatacaagaaaattaacatgatcattacccatttctcttcataatcatcatca 13743665  T
Q  192 aaccctaaccctcaatttattttc 215  Q
    ||||||||||||||||||||||||    
T  13743666 aaccctaaccctcaatttattttc 13743689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 14422841 - 14422959
Alignment:
Q  92 tatgatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 191  Q
    |||||||||| || ||| | |||||||||||||||||| |||||||  ||||||  ||||||||| ||||| ||||| |||||| ||||||||||||| |    
T  14422841 tatgatcacaacaacaatatagattaagttttcattctaaacattacattacaacagaattaacatgatcaataccc-attcccctcagaatcatcatca 14422939  T
Q  192 aaccctaaccctcaatttat 211  Q
    ||||||||||||||||||||    
T  14422940 aaccctaaccctcaatttat 14422959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 16009454 - 16009552
Alignment:
Q  112 agattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 211  Q
    |||||||||||||||||| |||||||  ||||||  ||||||||| ||||| ||||| |||||| ||||||||||||| ||||| |||||| ||||||||    
T  16009454 agattaagttttcattctaaacattacattacaacagaattaacatgatcaataccc-attcccctcagaatcatcatcaaaccttaacccacaatttat 16009552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 23057795 - 23057914
Alignment:
Q  92 tatgatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| ||||||||||||||||||| |    
T  23057795 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatca 23057894  T
Q  192 aaccctaaccctcaatttat 211  Q
    ||||||||||||||||||||    
T  23057895 aaccctaaccctcaatttat 23057914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 92 - 214
Target Start/End: Complemental strand, 29614345 - 29614224
Alignment:
Q  92 tatgatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 191  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||    |||||| ||||||||| |||||||||||| ||||||||| ||||||||| |    
T  29614345 tatgatcacagcaacaacaaagattaagttttcattctaaacatt-caatacaagagaattaacatgatcattacccatttcccttcataatcatcatca 29614247  T
Q  192 aaccctaaccctcaatttatttt 214  Q
    |||||||||||||||||||||||    
T  29614246 aaccctaaccctcaatttatttt 29614224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 10986359 - 10986261
Alignment:
Q  112 agattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 211  Q
    ||||||||||||||||||||||||||  ||||||  ||||||||| ||||| |||||| ||||| ||||||||||||| |||||||||||||||||||||    
T  10986359 agattaagttttcattctgaacattacattacaacagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttat 10986261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 23839075 - 23839173
Alignment:
Q  112 agattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 211  Q
    ||||||||||||||||||||||||||  ||||||  ||||||||| ||||| ||||| |||||| | ||||||||||| |||||||||||||||||||||    
T  23839075 agattaagttttcattctgaacattacattacaacagaattaacatgatcaataccc-attccccttagaatcatcatcaaaccctaaccctcaatttat 23839173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 4477714 - 4477832
Alignment:
Q  92 tatgatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 191  Q
    |||||||||| || ||| | |||||||||||||||||| |||||||  ||||||  |||||| || ||||| ||||| |||||| ||||||||||||| |    
T  4477714 tatgatcacaacaacaatatagattaagttttcattctaaacattacattacaacagaattagcatgatcaataccc-attcccctcagaatcatcatca 4477812  T
Q  192 aaccctaaccctcaatttat 211  Q
    ||||||||||| ||||||||    
T  4477813 aaccctaacccacaatttat 4477832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 94 - 208
Target Start/End: Original strand, 18800296 - 18800409
Alignment:
Q  94 tgatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaa 193  Q
    |||||||| || ||| | |||||||| ||||||| ||||||| |  ||||||  ||||||||| ||||||||| || |||||| |||||||||||| |||    
T  18800296 tgatcacaacaacaatatagattaagatttcattttgaacatcacattacaacagaattaacatgatcattactca-ttccctccagaatcatcatcaaa 18800394  T
Q  194 ccctaaccctcaatt 208  Q
    |||||||||||||||    
T  18800395 ccctaaccctcaatt 18800409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 92 - 209
Target Start/End: Complemental strand, 21565410 - 21565294
Alignment:
Q  92 tatgatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 191  Q
    ||||||||||||| ||  | |||||||| |||||||| |||| | |  ||||||   |||||||| |||||||||||| | ||||| ||||||||||| |    
T  21565410 tatgatcacagcaacagtatagattaagatttcattccgaacgtcacattacaacataattaacatgatcattacccattcccctt-agaatcatcatca 21565312  T
Q  192 aaccctaaccctcaattt 209  Q
    ||||||||||||||||||    
T  21565311 aaccctaaccctcaattt 21565294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 930227 - 930172
Alignment:
Q  158 gatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttatttt 214  Q
    |||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||    
T  930227 gatcattaccca-ttcccttcagaaacatcatcaaaccctaaccctcaatttatttt 930172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 22750998 - 22751117
Alignment:
Q  92 tatgatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| ||||||||||||||||||| |    
T  22750998 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatca 22751097  T
Q  192 aaccctaaccctcaatttat 211  Q
    ||||||||||||||||||||    
T  22751098 aaccctaaccctcaatttat 22751117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 112 - 215
Target Start/End: Complemental strand, 28370232 - 28370130
Alignment:
Q  112 agattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 211  Q
    |||||||||||||||||| ||||||| |||||||  ||||||||| ||||| |||||| ||||| ||| ||||||||| |||||||||||||||||||||    
T  28370232 agattaagttttcattctaaacattacgttacaacagaattaacatgatcaataccca-ttcccctcaaaatcatcatcaaaccctaaccctcaatttat 28370134  T
Q  212 tttc 215  Q
    ||||    
T  28370133 tttc 28370130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 112 - 215
Target Start/End: Complemental strand, 38144714 - 38144612
Alignment:
Q  112 agattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 211  Q
    |||||||||||||||||| |||||||  ||||||  ||||||||| ||||| |||||| ||||| ||||||||||||| |||||||||||||||||||||    
T  38144714 agattaagttttcattctaaacattacattacaatagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttat 38144616  T
Q  212 tttc 215  Q
    ||||    
T  38144615 tttc 38144612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 19512263 - 19512361
Alignment:
Q  112 agattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 211  Q
    |||||||||||||||||| ||||||| |||||||  ||||||||| ||||| ||||| |||||| ||| ||||||||| |||||||||||||||||||||    
T  19512263 agattaagttttcattctaaacattacgttacaatagaattaacatgatcaataccc-attcccctcaaaatcatcatcaaaccctaaccctcaatttat 19512361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 14762956 - 14762837
Alignment:
Q  92 tatgatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| ||||||||||||||||||| |    
T  14762956 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatca 14762857  T
Q  192 aaccctaaccctcaatttat 211  Q
    ||||||||||||||||||||    
T  14762856 aaccctaaccctcaatttat 14762837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 38310998 - 38310879
Alignment:
Q  92 tatgatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| ||||||||||||||||||| |    
T  38310998 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatca 38310899  T
Q  192 aaccctaaccctcaatttat 211  Q
    ||||||||||||||||||||    
T  38310898 aaccctaaccctcaatttat 38310879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 20247987 - 20247868
Alignment:
Q  92 tatgatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||| |||||||||||| ||||||||||||||||||| |    
T  20247987 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagaaaattaacatgatcattacccatttcccttcagaatcatcatca 20247888  T
Q  192 aaccctaaccctcaatttat 211  Q
    ||||||||||||||||||||    
T  20247887 aaccctaaccctcaatttat 20247868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 97 - 211
Target Start/End: Original strand, 24192817 - 24192931
Alignment:
Q  97 tcacagcagcaacaaagattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccc 196  Q
    |||||||| || || |||||||||||||||||||||||| |  ||||||  ||||||||| |||||||||||| ||||||||||||||||||| ||||||    
T  24192817 tcacagcaacagcatagattaagttttcattctgaacatcacattacaacagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccc 24192916  T
Q  197 taaccctcaatttat 211  Q
    |||||||||||||||    
T  24192917 taaccctcaatttat 24192931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 112 - 215
Target Start/End: Original strand, 9534205 - 9534307
Alignment:
Q  112 agattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 211  Q
    |||||||||||||||||| |||||||  ||||||  ||||||||| ||||| |||||| ||||  ||||||||||||| |||||||||||||||||||||    
T  9534205 agattaagttttcattctaaacattacattacaacagaattaacatgatcaataccca-ttccactcagaatcatcatcaaaccctaaccctcaatttat 9534303  T
Q  212 tttc 215  Q
    ||||    
T  9534304 tttc 9534307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 23370684 - 23370586
Alignment:
Q  112 agattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 211  Q
    |||||||||||||||||| |||||||  ||||||  ||||||||| ||||| |||||| ||||| ||||||||||||| |||||||||||| ||||||||    
T  23370684 agattaagttttcattctaaacattacattacaacagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaacccacaatttat 23370586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 55499281 - 55499185
Alignment:
Q  112 agattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaattt 209  Q
    |||||||| |||||||| |||||| |  ||||||   |||||||| |||||||||||| ||||| ||||||||||||| |||||||||||||||||||    
T  55499281 agattaagatttcattccgaacatcacattacaacataattaacatgatcattaccca-ttcccctcagaatcatcatcaaaccctaaccctcaattt 55499185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 92; Significance: 7e-45; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 12049 - 11926
Alignment:
Q  92 tatgatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 191  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||| ||||||||||||||||||| |    
T  12049 tatgatcacagcaacaacaaagattaagttttcattctgaagattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatca 11950  T
Q  192 aaccctaaccctcaatttattttc 215  Q
    ||||||||| ||||||||||||||    
T  11949 aaccctaactctcaatttattttc 11926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 112 - 215
Target Start/End: Original strand, 111563 - 111665
Alignment:
Q  112 agattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 211  Q
    |||||||||||||||||| |||||||  ||||||  ||||||||| ||||| |||||| ||||| ||||||||||||| |||||||||||||||||||||    
T  111563 agattaagttttcattctaaacattacattacaacagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttat 111661  T
Q  212 tttc 215  Q
    ||||    
T  111662 tttc 111665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 1036 - 1158
Alignment:
Q  92 tatgatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 191  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| ||||||||| |||| |||| |    
T  1036 tatgatcacagcaacaacaa-gattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcataatcctcatca 1134  T
Q  192 aaccctaaccctcaatttattttc 215  Q
    ||||||||||||||||||||||||    
T  1135 aaccctaaccctcaatttattttc 1158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 50037 - 50159
Alignment:
Q  92 tatgatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 191  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| ||||||||| |||| |||| |    
T  50037 tatgatcacagcaacaacaa-gattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcataatcctcatca 50135  T
Q  192 aaccctaaccctcaatttattttc 215  Q
    ||||||||||||||||||||||||    
T  50136 aaccctaaccctcaatttattttc 50159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 8046030 - 8045907
Alignment:
Q  92 tatgatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 191  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||| ||||||| |||||||||  ||| ||||||| |||||||||||||  || | |    
T  8046030 tatgatcacagcaacaacaaggattaagttttcattctgaacattatattacaagagaattaacattatctttacccatttcccttcagaattctcgtca 8045931  T
Q  192 aaccctaaccctcaatttattttc 215  Q
    ||||||||||||||||||||||||    
T  8045930 aaccctaaccctcaatttattttc 8045907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 92 - 214
Target Start/End: Original strand, 11847964 - 11848086
Alignment:
Q  92 tatgatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 191  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||  | ||||||| |||||||||||| | | |||||||||| |||| |    
T  11847964 tatgatcacagcaacaacaaagattaagttttcattctgaacattatattataaaaggattaacatgatcattacccattcctcttcagaatcgtcatca 11848063  T
Q  192 aaccctaaccctcaatttatttt 214  Q
    ||||||||||||||||| |||||    
T  11848064 aaccctaaccctcaattgatttt 11848086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 14595 - 14476
Alignment:
Q  92 tatgatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 191  Q
    ||||||||||||| || || ||||||||||||||||| |||||| |  ||||||  ||||||||| |||||||||||| ||||||||||||||||||| |    
T  14595 tatgatcacagcaacagcatagattaagttttcattcggaacatcacattacaacagaattaacatgatcattacccatttcccttcagaatcatcatca 14496  T
Q  192 aaccctaaccctcaatttat 211  Q
    ||||||||||||||||||||    
T  14495 aaccctaaccctcaatttat 14476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 949 - 827
Alignment:
Q  92 tatgatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 191  Q
    |||||||||| || |||||| ||||||||||| || ||||||||||| ||||||| | |||| || |||||||||||| ||||||||| |||| |||| |    
T  949 tatgatcacatcaacaacaa-gattaagtttttatcctgaacattatattacaagagtattatcatgatcattacccatttcccttcataatcctcatca 851  T
Q  192 aaccctaaccctcaatttattttc 215  Q
    ||||||||||||||||||||||||    
T  850 aaccctaaccctcaatttattttc 827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 2095 - 1974
Alignment:
Q  92 tatgatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 191  Q
    ||||||||||||| |||||| ||||||||||||||| |||||||||  ||||||| |||||||||  |||||||||||  | || ||| ||||||||| |    
T  2095 tatgatcacagcaacaacaaggattaagttttcattatgaacattaaattacaagagaattaacataatcattaccca--ttccatcaaaatcatcatca 1998  T
Q  192 aaccctaaccctcaatttattttc 215  Q
    ||||||||||||||| ||||||||    
T  1997 aaccctaaccctcaaattattttc 1974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 8772 - 8651
Alignment:
Q  92 tatgatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 191  Q
    ||||||||||||| |||||| ||||||||||||||| |||||||||  ||||||| |||||||||  |||||||||||  | || ||| ||||||||| |    
T  8772 tatgatcacagcaacaacaaggattaagttttcattttgaacattaaattacaagagaattaacataatcattaccca--ttccatcataatcatcatca 8675  T
Q  192 aaccctaaccctcaatttattttc 215  Q
    ||||||||||||||| ||||||||    
T  8674 aaccctaaccctcaaattattttc 8651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 9e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 112 - 215
Target Start/End: Original strand, 44477500 - 44477602
Alignment:
Q  112 agattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 211  Q
    |||||||||||||||||| ||||||| |||||||  ||||||||| ||||| ||||| |||||| ||| ||||||||| |||||||||||||||||||||    
T  44477500 agattaagttttcattctaaacattacgttacaacagaattaacatgatcaataccc-attcccctcaaaatcatcatcaaaccctaaccctcaatttat 44477598  T
Q  212 tttc 215  Q
    ||||    
T  44477599 tttc 44477602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 112 - 215
Target Start/End: Original strand, 44492658 - 44492760
Alignment:
Q  112 agattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 211  Q
    |||||||||||||||||| ||||||| |||||||  ||||||||| ||||| ||||| |||||| ||| ||||||||| |||||||||||||||||||||    
T  44492658 agattaagttttcattctaaacattacgttacaacagaattaacatgatcaataccc-attcccctcaaaatcatcatcaaaccctaaccctcaatttat 44492756  T
Q  212 tttc 215  Q
    ||||    
T  44492757 tttc 44492760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 23866490 - 23866595
Alignment:
Q  111 aagattaagttttcattctgaacattatgttacaagg-gaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaattt 209  Q
    ||||||||||||  |||||||||||||| ||||||   ||||||||| |||||||||||| ||| ||||| ||||||||| |||||||||||||||||||    
T  23866490 aagattaagtttatattctgaacattatattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaattt 23866589  T
Q  210 attttc 215  Q
    ||||||    
T  23866590 attttc 23866595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 8727911 - 8727813
Alignment:
Q  112 agattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 211  Q
    ||||||||||||||||||||||||||  ||||||  ||||||||| ||||| ||||| || ||| ||||||||||| | |||||||||||||||||||||    
T  8727911 agattaagttttcattctgaacattacattacaacagaattaacatgatcaataccc-atacccctcagaatcatcgtcaaaccctaaccctcaatttat 8727813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 112 - 199
Target Start/End: Complemental strand, 27941032 - 27940946
Alignment:
Q  112 agattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaa 199  Q
    ||||||| ||||||||||||||||||  ||||||  ||||||||| ||||| ||||| |||||| ||||||||||||| |||||||||    
T  27941032 agattaaattttcattctgaacattacattacaacagaattaacatgatcaataccc-attcccctcagaatcatcatcaaaccctaa 27940946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 112 - 215
Target Start/End: Original strand, 6483595 - 6483697
Alignment:
Q  112 agattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 211  Q
    |||||||||||||||||| ||||||| |||||||  ||||||||| ||||| ||||| |||||| ||| ||||||||| |||||||||||||||||||||    
T  6483595 agattaagttttcattctaaacattacgttacaacagaattaacatgatcaataccc-attcccctcaaaatcatcatcaaaccctaaccctcaatttat 6483693  T
Q  212 tttc 215  Q
    ||||    
T  6483694 tttc 6483697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 112 - 215
Target Start/End: Original strand, 6487062 - 6487164
Alignment:
Q  112 agattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 211  Q
    |||||||||||||||||| ||||||| |||||||  ||||||||| ||||| ||||| |||||| ||| ||||||||| |||||||||||||||||||||    
T  6487062 agattaagttttcattctaaacattacgttacaacagaattaacatgatcaataccc-attcccctcaaaatcatcatcaaaccctaaccctcaatttat 6487160  T
Q  212 tttc 215  Q
    ||||    
T  6487161 tttc 6487164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 19661651 - 19661533
Alignment:
Q  92 tatgatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 191  Q
    |||||||||| || ||| | |||||||||||||||||| |||||||  ||||||  ||||||||| ||||| |||||| ||||| ||||||||||||| |    
T  19661651 tatgatcacaacaacaatatagattaagttttcattctaaacattacattacaacagaattaacatgatcaataccca-ttcccctcagaatcatcatca 19661553  T
Q  192 aaccctaaccctcaatttat 211  Q
    ||||||||||||||||||||    
T  19661552 aaccctaaccctcaatttat 19661533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 210
Target Start/End: Original strand, 23878885 - 23878982
Alignment:
Q  112 agattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaattta 210  Q
    |||||||| ||||||||||||||| |  ||||||   |||||||| ||||||||||| |||||| ||||||||||||   |||||||||||||||||||    
T  23878885 agattaagatttcattctgaacatcacattacaacataattaacatgatcattaccccattcccctcagaatcatca-acaaccctaaccctcaattta 23878982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 92 - 209
Target Start/End: Complemental strand, 23089253 - 23089137
Alignment:
Q  92 tatgatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 191  Q
    ||||||||||||| ||  | |||||||| |||||||| |||| | |  ||||||   |||||||| |||||||||||| | ||||| ||||||||||| |    
T  23089253 tatgatcacagcaacagtatagattaagatttcattccgaacgtcacattacaacataattaacatgatcattacccattcccctt-agaatcatcatca 23089155  T
Q  192 aaccctaaccctcaattt 209  Q
    ||||||||||||||||||    
T  23089154 aaccctaaccctcaattt 23089137  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 23101641 - 23101545
Alignment:
Q  112 agattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaattt 209  Q
    |||||||| |||||||| |||| | |  ||||||   |||||||| |||||||||||| ||||| ||||||||||||| |||||||||||||||||||    
T  23101641 agattaagatttcattccgaacgtcacattacaacataattaacatgatcattaccca-ttcccctcagaatcatcatcaaaccctaaccctcaattt 23101545  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 26583715 - 26583807
Alignment:
Q  122 ttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttc 215  Q
    |||||||||||||| |  ||||||   | |||||| |||||||||||  ||||| ||||||||||||| || ||||||||||||||||||||||    
T  26583715 ttcattctgaacatcactttacaacatatttaacatgatcattaccct-ttcccctcagaatcatcatcaagccctaaccctcaatttattttc 26583807  T

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Target: scaffold0058 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 149 - 271
Alignment:
Q  92 tatgatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 191  Q
    |||||||||| ||  |||| ||||||||| |||| ||||||||  ||  ||||||  |||||||| |||||||||||| ||||| ||||||||||||| |    
T  149 tatgatcacatcaataacatagattaagtcttcaatctgaacaccataatacaagaaaattaacatgatcattaccca-ttcccctcagaatcatcatca 247  T
Q  192 aaccctaaccctcaatttattttc 215  Q
    ||||||||||||||||||||||||    
T  248 aaccctaaccctcaatttattttc 271  T

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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 20437202 - 20437104
Alignment:
Q  112 agattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 211  Q
    ||||||||||||||||||||||||||  ||||||   |||||||| ||||| |||||| ||||| ||||||||||||| |||||||||||||||||||||    
T  20437202 agattaagttttcattctgaacattacattacaacataattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttat 20437104  T

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Target: scaffold0553 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 10374 - 10276
Alignment:
Q  112 agattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 211  Q
    |||||||||||||||||| |||||||  ||||||  ||||||||| ||||| |||||| ||||| ||||||||||||| |||||||||||| ||||||||    
T  10374 agattaagttttcattctaaacattacattacaacagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaacccacaatttat 10276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 1704 - 1606
Alignment:
Q  112 agattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 211  Q
    |||||||||||||||||| |||||||  ||||||  ||||||||| ||||| |||||| ||||| ||||||||||||| |||||||||||| ||||||||    
T  1704 agattaagttttcattctaaacattacattacaacagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaacccacaatttat 1606  T

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Target: scaffold0090 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 215
Target Start/End: Original strand, 18026 - 18148
Alignment:
Q  93 atgatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagg-gaattaacacgatcattacccaattcccttcagaatcatcatta 191  Q
    |||||||||||| ||||| || |||||||||||||||| |||| |  ||||||   ||||||||| || ||||||| | ||||| | |||||||||||||    
T  18026 atgatcacagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgttagaatcatcatta 18124  T
Q  192 aaccctaaccctcaatttattttc 215  Q
    |||| |||||||||||||||||||    
T  18125 aaccttaaccctcaatttattttc 18148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 94 - 209
Target Start/End: Complemental strand, 3490 - 3375
Alignment:
Q  94 tgatcacagcagcaacaaagattaagttttcattctgaacattatgttacaagggaattaacacgat-cattacccaattcccttcagaatcatcattaa 192  Q
    ||||||||||| ||  | |||||||| ||||||||||||||| |  ||||||   |||||||| ||| ||||||||| ||||| ||||||||||||| ||    
T  3490 tgatcacagcaacagtatagattaagatttcattctgaacatcacattacaacaaaattaacatgattcattaccca-ttcccctcagaatcatcatcaa 3392  T
Q  193 accctaaccctcaattt 209  Q
    |||||||||||||||||    
T  3391 accctaaccctcaattt 3375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 113 - 208
Target Start/End: Original strand, 11219 - 11313
Alignment:
Q  113 gattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatt 208  Q
    ||||||| ||||||| ||||||| |  ||||||  ||||||||| ||||||||| || |||||| |||||||||||| ||||||||||||||||||    
T  11219 gattaagatttcattttgaacatcacattacaacagaattaacatgatcattactca-ttccctccagaatcatcatcaaaccctaaccctcaatt 11313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 3800 - 3704
Alignment:
Q  112 agattaagttttcattctgaacattatgttacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaattt 209  Q
    |||||||| |||||||| |||||| |  ||||||   |||||||| |||||||||||| | ||| ||||||||||||| |||||||||||||||||||    
T  3800 agattaagatttcattccgaacatcacattacaacataattaacatgatcattaccca-tccccctcagaatcatcatcaaaccctaaccctcaattt 3704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 131
Target Start/End: Original strand, 3519 - 3558
Alignment:
Q  92 tatgatcacagcagcaacaaagattaagttttcattctga 131  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  3519 tatgatcacagcaacaacaaagattaagttttcattctga 3558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 135
Target Start/End: Original strand, 846 - 889
Alignment:
Q  92 tatgatcacagcagcaacaaagattaagttttcattctgaacat 135  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||    
T  846 tatgatcacagcaacaacacagattaagttttcattctgaacat 889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 135
Target Start/End: Original strand, 7991 - 8034
Alignment:
Q  92 tatgatcacagcagcaacaaagattaagttttcattctgaacat 135  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||    
T  7991 tatgatcacagcaacaacacagattaagttttcattctgaacat 8034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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