View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7107_high_4 (Length: 604)
Name: NF7107_high_4
Description: NF7107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7107_high_4 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 8 - 586
Target Start/End: Original strand, 4716575 - 4717153
Alignment:
| Q |
8 |
agatgaagcaagaaaaaatggttcaaccatccaaataagcgatctcgtagacaatgaaatgggaatgtttgaagcatatgtcatatttgacggtccaatg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4716575 |
agatgaagcaagaaaaaatggttcaaccatccaaataagcgatctcgtagacaatgaaatgggaatgtttgaagcatatgtcatatttgacggtccaatg |
4716674 |
T |
|
| Q |
108 |
aagggcatctacagaaaatgggcaattgcaaagcaacatatcatcgacaacaaggtacgccataaaggctacaagacaatgaaagaagctgaataggcac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4716675 |
aagggcatctacagaaaatgggcaattgcaaagcaacatatcatcgacaacaaggtacgccataaaggctacaagacaatgaaagaagctgaataggcac |
4716774 |
T |
|
| Q |
208 |
tttacagttcatacaaagaggttacaacagcgaaaaatctacatagatctccaacaatggaatctagaaagaagatgtcaattgacaaaatccgtcagct |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
4716775 |
tttacagttcatacaaagaggttacaacagcgaaaaatctacatagatctccaacaatggaatctagaaagaagatgtcaattgacaaaattcgtcagct |
4716874 |
T |
|
| Q |
308 |
cgaacaactatgtagaagaattcaccactgaatgtttctacccaatcagcagacttggttgtacgaaagtagtcatattaccaggaatagatagcaccac |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4716875 |
cgaacaactatgtagaagaattcaccactgaatgtttctacccaatccgcagacttggttgtacgaaagtagtcatattaccaggaatagatagcaccac |
4716974 |
T |
|
| Q |
408 |
atgtctatctttctttcagaatggtttgattcacaccatatatctagaagaacaaccaggaaaaacatttggagaactcaagttccttccaaacgagtta |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4716975 |
atgtctatctttctttcagaatggtttgattcacaccatatatctagaagaacaaccaggaaaaacatttggagaactcaagttccttccaaacgagtta |
4717074 |
T |
|
| Q |
508 |
caaaatttggcacaaaagttcaacaatttgttcgccaaaggtaaagagatctttcttcaaattgactctacatatcctt |
586 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4717075 |
caaaatttggcacaaaagttcaacaatttgttcgccaaaggtaaagagatctttcttcaaattgactctacatatcctt |
4717153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 310 - 586
Target Start/End: Original strand, 41616629 - 41616905
Alignment:
| Q |
310 |
aacaactatgtagaagaattcaccactgaatgtttctacccaatcagcagacttggttgtacgaaagtagtcatattaccaggaatagatagcaccacat |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||| |||| ||||| |||| ||||||||||||||||||||| |||||||||| |
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|
| T |
41616629 |
aacaactatgtagaagaattcaccactgaatgcttctacccaatcagtagatttggatgtaccaaagcagtcatattaccaggaatagacagcaccacat |
41616728 |
T |
|
| Q |
410 |
gtctatctttctttcagaatggtttgattcacaccatatatctagaagaacaaccaggaaaaacatttggagaactcaagttccttccaaacgagttaca |
509 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
41616729 |
gtctatctttctttcagaatggtttaattcacaccatatatctggaagaacaaccaggaaaaacatttggagaactcaagttccttccaaatgagttaca |
41616828 |
T |
|
| Q |
510 |
aaatttggcacaaaagttcaacaatttgttcgccaaaggtaaagagatctttcttcaaattgactctacatatcctt |
586 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| |
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|
| T |
41616829 |
aaatttcgcacaaaagttcaacaatttgtttgccaaaggaaaagagatctttcttcagattgactctacatatcctt |
41616905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 313
Target Start/End: Original strand, 2620088 - 2620394
Alignment:
| Q |
8 |
agatgaagcaagaaaa-aatggttcaaccatccaaataagcgatctcgtagacaatgaaatgggaatgtttgaagcatatgtcatatttgacggtccaat |
106 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| || ||||||||||| |
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|
| T |
2620088 |
agatgaagcaagaaaaaaatggttcaaccatccaaataagcgatctcgtagataatgaaatgggaaagtttgaagcatatgtcattttcgacggtccaat |
2620187 |
T |
|
| Q |
107 |
gaagggcatctacagaaaatgggcaattgcaaagcaacatatcatcgacaacaaggtacgccataaaggctacaagacaatgaaagaagctgaataggca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |||||| || || |||||||| |||||||||||||||||||||||||||||| ||||| |
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|
| T |
2620188 |
gaagggcatctacagaaaatgggcaattgcaaaacaacatgtcatcggtaagaatgtacgccacaaaggctacaagacaatgaaagaagctgaacaggca |
2620287 |
T |
|
| Q |
207 |
ctttacagttcatacaaagaggttacaacagcgaaaaatctacatagatctccaacaatggaatctagaaagaagatgtcaattgacaaaatccgtcagc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||| || || ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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|
| T |
2620288 |
ctttacagttcatacaaagaggttacaatagcaaaaaacctccaaagatctccaacaatggagtctaaaaagaagatgtcaattgacaaaatccgtcagg |
2620387 |
T |
|
| Q |
307 |
tcgaaca |
313 |
Q |
| |
|
||||||| |
|
|
| T |
2620388 |
tcgaaca |
2620394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 8 - 313
Target Start/End: Original strand, 41616259 - 41616564
Alignment:
| Q |
8 |
agatgaagcaagaaaaaatggttcaaccatccaaataagcgatctcgtagacaatgaaatgggaatgtttgaagcatatgtcatatttgacggtccaatg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| || |||||||||||| |
|
|
| T |
41616259 |
agatgaagcaagaaaaaatggttcaaccatccaaataagcgatctcgtagataatgatatgggaaagtttgaagcatatgtcattttcgacggtccaatg |
41616358 |
T |
|
| Q |
108 |
aagggcatctacagaaaatgggcaattgcaaagcaacatatcatcgacaacaaggtacgccataaaggctacaagacaatgaaagaagctgaataggcac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| || || |||||||| |||||||||||||| ||||||||||||||| | |||| |
|
|
| T |
41616359 |
aagggcatctacagaaaatgggcaattgcaaaacaacatatcatcggtaagaatgtacgccacaaaggctacaagacgatgaaagaagctgaacatgcac |
41616458 |
T |
|
| Q |
208 |
tttacagttcatacaaagaggttacaacagcgaaaaatctacatagatctccaacaatggaatctagaaagaagatgtcaattgacaaaatccgtcagct |
307 |
Q |
| |
|
|| || ||||||||||||||||||||| ||||||||| || || ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41616459 |
ttgacggttcatacaaagaggttacaatagcgaaaaacctccaaagatctccaacaatggagtctaaaaagaagatgtcaattgacaaaatccgtcagct |
41616558 |
T |
|
| Q |
308 |
cgaaca |
313 |
Q |
| |
|
|||||| |
|
|
| T |
41616559 |
cgaaca |
41616564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 310 - 586
Target Start/End: Original strand, 2620459 - 2620735
Alignment:
| Q |
310 |
aacaactatgtagaagaattcaccactgaatgtttctacccaatcagcagacttggttgtacgaaagtagtcatattaccaggaatagatagcaccacat |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||| |||| ||||| |||| ||||||||||||||||||||| | |||||||| |
|
|
| T |
2620459 |
aacaactatgtagaagaattcaccactgaatgcttctacccaatcagtagatttggatgtaccaaagcagtcatattaccaggaatagacaacaccacat |
2620558 |
T |
|
| Q |
410 |
gtctatctttctttcagaatggtttgattcacaccatatatctagaagaacaaccaggaaaaacatttggagaactcaagttccttccaaacgagttaca |
509 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||| || |
|
|
| T |
2620559 |
gtctatctttctttcagaatggtttaattcacaccatatatctggaagaacaaccaggaaatttttttggagaactcaagttgcttccaaatgagttgca |
2620658 |
T |
|
| Q |
510 |
aaatttggcacaaaagttcaacaatttgttcgccaaaggtaaagagatctttcttcaaattgactctacatatcctt |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
2620659 |
aaatttggcacaaaagttcaacaatttgtttgccaaaggaaaagagatatttcttcagattgactctacatatcctt |
2620735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 310 - 585
Target Start/End: Complemental strand, 22426885 - 22426610
Alignment:
| Q |
310 |
aacaactatgtagaagaattcaccactgaatgtttctacccaatcagcagacttggttgtacgaaagtagtcatattaccaggaatagatagcaccacat |
409 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||| ||||| |||| || ||||||| |||| || |||||| ||||||| |||||||||||||| |
|
|
| T |
22426885 |
aacaactatgtagaataattcaccactgaatgcttctacctaatcaacagatttagttgtaccaaagcagccatatttccaggaacagatagcaccacat |
22426786 |
T |
|
| Q |
410 |
gtctatctttctttcagaatggtttgattcacaccatatatctagaagaacaaccaggaaaaacatttggagaactcaagttccttccaaacgagttaca |
509 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22426785 |
gtctatctttctttcagaatggtttaattcacaccatatatctagaagaacaaccaggaaaaacatttggagaactcaagttccttccaaacgagttaca |
22426686 |
T |
|
| Q |
510 |
aaatttggcacaaaagttcaacaatttgttcgccaaaggtaaagagatctttcttcaaattgactctacatatcct |
585 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| |
|
|
| T |
22426685 |
aaatttggaataaaagttcaacaatttgttcgccaaagaaaaagagatctttcttcagatcgactctacatatcct |
22426610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 313
Target Start/End: Complemental strand, 22427255 - 22426950
Alignment:
| Q |
8 |
agatgaagcaagaaaaaatggttcaaccatccaaataagcgatctcgtagacaatgaaatgggaatgtttgaagcatatgtcatatttgacggtccaatg |
107 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||| || |||||||||||| |
|
|
| T |
22427255 |
agatgaagcaagaaaaaatgattcaaccatccaaacaagcgatcacgtagacaatgaaatgggaaagtttgaagcatatgtcattttcgacggtccaatg |
22427156 |
T |
|
| Q |
108 |
aagggcatctacagaaaatgggcaattgcaaagcaacatatcatcgacaacaaggtacgccataaaggctacaagacaatgaaagaagctgaataggcac |
207 |
Q |
| |
|
|| | |||||| |||||||||||||||||||| ||||||||||| ||||| || |||| ||| |||||||||||||||||| |||||||| || | | | |
|
|
| T |
22427155 |
aaagacatctatagaaaatgggcaattgcaaaacaacatatcattgacaagaatgtacaccacaaaggctacaagacaatgtaagaagctaaacatgaat |
22427056 |
T |
|
| Q |
208 |
tttacagttcatacaaagaggttacaacagcgaaaaatctacatagatctccaacaatggaatctagaaagaagatgtcaattgacaaaatccgtcagct |
307 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||| || || ||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
22427055 |
tttacggttcatacaaagaggttacaacaacgaaaaacctccaaagatctccaacaatggagtctaaaaagaagatttcaattgacaaaatccgtcagct |
22426956 |
T |
|
| Q |
308 |
cgaaca |
313 |
Q |
| |
|
|||||| |
|
|
| T |
22426955 |
cgaaca |
22426950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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