View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7107_high_6 (Length: 502)
Name: NF7107_high_6
Description: NF7107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7107_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 173; Significance: 8e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 232 - 491
Target Start/End: Original strand, 33221051 - 33221310
Alignment:
| Q |
232 |
tacaaataaaatcatattaatggatgaaatttgatggatcaacatgcatgttaaaagggattgaaaattaaattggttttaagacacaaaaactggttgg |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33221051 |
tacaaataaaatcatattaatggatgaaatttgatggatcaacatgcatgttaaaagggattgaaaattaaattggttttaagacacaaaaattggttgg |
33221150 |
T |
|
| Q |
332 |
tatactgaaaaatgattgagagattcagatcagatcattatcataaccctaatnnnnnnnnnnnnnnnnnnnnnnnnngatcttacattgctcccatcag |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33221151 |
tatactgaaaaatgattgagagattcagatcagatcattatcataaccctaataaaagagaaaaaaatgaaataaaaagatcttacattgctcccatcag |
33221250 |
T |
|
| Q |
432 |
ataaagatcttacatcgccactgagtaaacatggtcaacgaagttgcatttgcatcacaa |
491 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33221251 |
ataaagatcttacattgccactgagtaaacatggtcaatgaagttgcatttgcatcacaa |
33221310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 33220820 - 33220967
Alignment:
| Q |
1 |
tattgatcgaatctaatcatatgtgtctgtgttgtgttgtatcagtaacagatgtcgacacatgctgaacatcaaacaaatttttatttttaagcgtcga |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33220820 |
tattgatcgaatctaatcacatgtgtctgtgttgtgttgtatcagtaacagatgttgacacatgctgaacatcaaacaaatttttatttttaagtgtcga |
33220919 |
T |
|
| Q |
101 |
tgatgaacatgagcaatatgaacatggcaaagattaagaacatcgagg |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33220920 |
tgatgaacatgagcaatatgaacatggcaaagattaagaacatcgagg |
33220967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University