View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7107_high_9 (Length: 354)

Name: NF7107_high_9
Description: NF7107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7107_high_9
NF7107_high_9
[»] chr3 (4 HSPs)
chr3 (18-339)||(39349834-39350150)
chr3 (18-80)||(43726273-43726334)
chr3 (22-80)||(38342130-38342188)
chr3 (142-196)||(43726377-43726433)
[»] chr5 (6 HSPs)
chr5 (18-117)||(6660618-6660717)
chr5 (15-199)||(38366571-38366753)
chr5 (22-101)||(10016785-10016864)
chr5 (26-196)||(36340652-36340819)
chr5 (26-101)||(35336082-35336158)
chr5 (152-206)||(8735776-8735830)
[»] chr4 (14 HSPs)
chr4 (16-199)||(47476672-47476850)
chr4 (18-185)||(30843024-30843186)
chr4 (18-196)||(43702633-43702810)
chr4 (26-99)||(26939224-26939298)
chr4 (152-196)||(26939347-26939391)
chr4 (152-199)||(2012763-2012810)
chr4 (152-199)||(31094181-31094228)
chr4 (152-199)||(40690439-40690486)
chr4 (152-199)||(56318864-56318911)
chr4 (150-199)||(51890235-51890284)
chr4 (22-117)||(3425407-3425503)
chr4 (152-196)||(4049215-4049259)
chr4 (152-196)||(33282133-33282177)
chr4 (152-196)||(53513372-53513416)
[»] chr1 (8 HSPs)
chr1 (18-199)||(32295645-32295821)
chr1 (19-99)||(28791904-28791984)
chr1 (19-105)||(10887947-10888034)
chr1 (22-76)||(35067518-35067572)
chr1 (22-80)||(26114713-26114771)
chr1 (120-199)||(28791819-28791900)
chr1 (22-80)||(50547821-50547879)
chr1 (19-60)||(42093184-42093225)
[»] chr8 (9 HSPs)
chr8 (18-199)||(40521538-40521715)
chr8 (22-101)||(36833657-36833736)
chr8 (152-199)||(11077250-11077297)
chr8 (145-199)||(26218293-26218347)
chr8 (18-72)||(43097295-43097349)
chr8 (26-105)||(42279596-42279677)
chr8 (152-199)||(35683024-35683071)
chr8 (22-80)||(34660434-34660492)
chr8 (135-196)||(36833765-36833828)
[»] chr6 (2 HSPs)
chr6 (22-101)||(6941277-6941356)
chr6 (152-199)||(440127-440174)
[»] chr2 (4 HSPs)
chr2 (152-199)||(38702617-38702664)
chr2 (152-199)||(38209411-38209458)
chr2 (152-194)||(25715222-25715264)
chr2 (167-199)||(44761133-44761165)
[»] chr7 (3 HSPs)
chr7 (22-80)||(31187165-31187223)
chr7 (152-199)||(38247146-38247193)
chr7 (152-199)||(46255940-46255987)
[»] scaffold0210 (1 HSPs)
scaffold0210 (152-190)||(8620-8658)


Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 39349834 - 39350150
Alignment:
Q  18 gattcatctattcatcactgacatcttcattcattagggtgatgaagtgccaaaatccacaaataaatccgaaattaatattccagaagtagttcagatt 117  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  39349834 gattcatctattcatcagtgacatcttcattcattagggtgatgaagttccaaaatccacgaataaatccgaaattaatattccggaagtagttcagatt 39349933  T
Q  118 cagattatattttccaaacaaagagtattttgggaaaaa-taaggcgcgtgaggaaagatatagggtgggaaaaataatagtccttatttattgtatacc 216  Q
          |||||||| |||||||| ||||||||||||||| || |||||||||||||||||||||| || ||||| ||||||||| |||||| ||||||||    
T  39349934 ------atattttctaaacaaagggtattttgggaaaaaatagggcgcgtgaggaaagatataggatgagaaaagtaatagtccatatttaatgtatacc 39350027  T
Q  217 gctagcacaaaatctcttttatttgtttcccatttccactttctcccacttcagtgtttcacattgtttgtttgtattatttttcaaaacccgatttgct 316  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39350028 gctagcacaaaatctcttttatttgtttcccgtttccactttctcccactttagtgtttcacattgtttgtttgtattatttttcaaaacccgatttgct 39350127  T
Q  317 ttgtgttttatattcccactttt 339  Q
    |||||||||||||||||||||||    
T  39350128 ttgtgttttatattcccactttt 39350150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 43726273 - 43726334
Alignment:
Q  18 gattcatctattcatcactgacatcttcattcattagggtgatgaagtgccaaaatccacaaa 80  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||| || |||||||||||    
T  43726273 gattcatctattcattactgacatcttcattcatcagggtgatgaagttcc-aaatccacaaa 43726334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 38342130 - 38342188
Alignment:
Q  22 catctattcatcactgacatcttcattcattagggtgatgaagtgccaaaatccacaaa 80  Q
    ||||||||||| ||| |||||||||| ||| ||  |||||||||||||||| |||||||    
T  38342130 catctattcataacttacatcttcatccatcagcatgatgaagtgccaaaaaccacaaa 38342188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 43726377 - 43726433
Alignment:
Q  142 gtattttggg--aaaaataaggcgcgtgaggaaagatatagggtgggaaaaataata 196  Q
    ||||||||||  ||||||| |||||| ||||||||| |||||||||||||| |||||    
T  43726377 gtattttggggaaaaaatagggcgcgcgaggaaagacatagggtgggaaaagtaata 43726433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 6660618 - 6660717
Alignment:
Q  18 gattcatctattcatcactgacatcttcattcattagggtgatgaagtgccaaaatccacaaataaatccgaaattaatattccagaagtagttcagatt 117  Q
    |||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6660618 gattcatctattcatcactgacatcttcatccatcaaggtgatgaagtgccaaaatccacgaataaatccgaaattaatattccagaagtagttcagatt 6660717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 38366571 - 38366753
Alignment:
Q  15 tcagattcatctattcatcactgacatcttcattcattagggtgatgaagtgccaaaatccacaaataaatccgaaattaatattccagaagtagttcag 114  Q
    ||||||||||||||||||||| ||||||||||| ||| ||| ||||||||||||||||||||| |||||||||| |||||||||||   ||||||         
T  38366571 tcagattcatctattcatcaccgacatcttcatccatcaggatgatgaagtgccaaaatccacgaataaatccggaattaatattctgaaagtag----- 38366665  T
Q  115 attcagattatattttccaaacaaagagtattttggg----aaaaataaggcgcgtgaggaaagatatagggtgggaaaaataatagtc 199  Q
     ||| ||||||||||||| ||||||| ||||||||||    ||||| |||||||| |||||| | |||| ||||  |||| ||||||||    
T  38366666 -ttcggattatattttccgaacaaagggtattttgggaagaaaaaaaaaggcgcgcgaggaagggtatatggtgaaaaaagtaatagtc 38366753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 10016785 - 10016864
Alignment:
Q  22 catctattcatcactgacatcttcattcattagggtgatgaagtgccaaaatccacaaataaatccgaaattaatattcc 101  Q
    ||||||||||| || ||||||||||| ||| |||||||||||||| |||||||||||||  ||||||||||| |||||||    
T  10016785 catctattcattaccgacatcttcatccatcagggtgatgaagtgtcaaaatccacaaaataatccgaaatttatattcc 10016864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 26 - 196
Target Start/End: Original strand, 36340652 - 36340819
Alignment:
Q  26 tattcatcactgacatcttcattcattagggtg-atgaagtgccaaaatccacaaataaatccgaaattaatattccagaagtagttcagattcagatta 124  Q
    ||||||| ||||||||| |||| ||| |||||| || |||||||||||| ||| |||||||||| |||||||||||  |||        |||||||||||    
T  36340652 tattcataactgacatcatcatccatcagggtggatcaagtgccaaaatacacgaataaatccggaattaatattcgggaa------tggattcagatta 36340745  T
Q  125 tattttccaaacaaagagtattttgggaa--aaataaggcgcgtgaggaaagatatagggtgggaaaaataata 196  Q
    |||  |||  || | | ||||| ||||||  ||||| ||||||||||||||||||||||||||||||| |||||    
T  36340746 tataatccggactaggggtattatgggaaagaaatagggcgcgtgaggaaagatatagggtgggaaaagtaata 36340819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 35336082 - 35336158
Alignment:
Q  26 tattcatcactgacatcttcattcattagggtg-atgaagtgccaaaatccacaaataaatccgaaattaatattcc 101  Q
    ||||||| |||| |||| |||| ||| |||||| ||||||||||||||| ||| |||||||||| ||||||||||||    
T  35336082 tattcataactggcatcatcatccatcagggtggatgaagtgccaaaatacacgaataaatccggaattaatattcc 35336158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 8735776 - 8735830
Alignment:
Q  152 aaaaataaggcgcgtgaggaaagatatagggtgggaaaaataatagtccttattt 206  Q
    ||||||| | |||| ||||||||||||||||||| |||| |||||||| ||||||    
T  8735776 aaaaataggacgcgcgaggaaagatatagggtggaaaaagtaatagtctttattt 8735830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 47476672 - 47476850
Alignment:
Q  16 cagattcatctattcatcactgacatcttcattcattagggtgatgaagtgccaaaatccacaaataaatccgaaattaatattccagaagtagttcaga 115  Q
    ||||||||||||||||||| |||||||||||| | |||||||||||||||| |||||||||| |||||||||| || ||||||||| |||||||          
T  47476672 cagattcatctattcatcagtgacatcttcatcctttagggtgatgaagtgtcaaaatccacgaataaatccggaa-taatattccggaagtag------ 47476764  T
Q  116 ttcagattatattttccaaacaaagagtattttggg--aaaaataaggcgcgtgaggaaagatatagggtgggaaaaataatagtc 199  Q
    ||| ||||||||||||||||||||| ||| ||||||  ||||||| |||||| |||||||| ||||||||||||||| ||| ||||    
T  47476765 ttcggattatattttccaaacaaagggtaatttgggaaaaaaatagggcgcgagaggaaaggtatagggtgggaaaagtaacagtc 47476850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 30843186 - 30843024
Alignment:
Q  18 gattcatctattcatcactgacatcttcattcattagggtgatgaagtgccaaaatccacaaataaatccgaaattaatattccagaagtagttcagatt 117  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||      ||    
T  30843186 gattcatctattcatcactgacatcttcatccatcagggtgatgaagtgccaaaatccacgaataaatccgaaattaatattccggaagtag------tt 30843093  T
Q  118 cagattatattttccaaacaaagagtattttgg-gaaaaataaggcgcgtgaggaaagatatagggtgg 185  Q
    || ||||||||||   ||||||| |||||||||  ||||||| ||| || |||||||| ||||||||||    
T  30843092 caaattatattttttgaacaaagggtattttggaaaaaaatagggcacgcgaggaaaggtatagggtgg 30843024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 43702810 - 43702633
Alignment:
Q  18 gattcatctattcatcactgacatcttcattcattagggtgatgaagtgccaaaatccacaaataaatccgaaattaatattccagaagtagttcagatt 117  Q
    ||||||||||||||| |||||||||||||| ||| |||||||| |||||||||||||||| |||||||||| |||||||||||| |||||||      ||    
T  43702810 gattcatctattcattactgacatcttcatccatcagggtgattaagtgccaaaatccacgaataaatccggaattaatattccggaagtag------tt 43702717  T
Q  118 cagattatattttccaaacaaagagtattttgg-----gaaaaataaggcgcgtgaggaaagatatagggtgggaaaaataata 196  Q
    | ||||||||||| |  |||||| |||||||||      ||||||| ||||||||||||||| ||||||||||||||| |||||    
T  43702716 cggattatatttttcggacaaagggtattttggaagaaaaaaaatagggcgcgtgaggaaaggtatagggtgggaaaagtaata 43702633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 26939224 - 26939298
Alignment:
Q  26 tattcatcactgacatcttcattcattagggtg-atgaagtgccaaaatccacaaataaatccgaaattaatatt 99  Q
    ||||||| ||||||||| |||||||| |||||| ||||||||||||||| ||| |||||||||| ||||||||||    
T  26939224 tattcataactgacatcatcattcatcagggtggatgaagtgccaaaatacacgaataaatccggaattaatatt 26939298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 26939347 - 26939391
Alignment:
Q  152 aaaaataaggcgcgtgaggaaagatatagggtgggaaaaataata 196  Q
    ||||||| |||||||||||||||| |||||||||||||| |||||    
T  26939347 aaaaatagggcgcgtgaggaaagacatagggtgggaaaagtaata 26939391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 2012810 - 2012763
Alignment:
Q  152 aaaaataaggcgcgtgaggaaagatatagggtgggaaaaataatagtc 199  Q
    ||||||| |||||| ||||||||||||||||| |||||| ||||||||    
T  2012810 aaaaatagggcgcgcgaggaaagatatagggtaggaaaagtaatagtc 2012763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 31094181 - 31094228
Alignment:
Q  152 aaaaataaggcgcgtgaggaaagatatagggtgggaaaaataatagtc 199  Q
    ||||||| |||||| ||||||||| |||||||||||||| ||||||||    
T  31094181 aaaaatagggcgcgcgaggaaagacatagggtgggaaaagtaatagtc 31094228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 40690486 - 40690439
Alignment:
Q  152 aaaaataaggcgcgtgaggaaagatatagggtgggaaaaataatagtc 199  Q
    ||||||| |||||| ||||||||| ||||||| |||||||||||||||    
T  40690486 aaaaatagggcgcgcgaggaaagacatagggtcggaaaaataatagtc 40690439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 56318864 - 56318911
Alignment:
Q  152 aaaaataaggcgcgtgaggaaagatatagggtgggaaaaataatagtc 199  Q
    ||||||| |||||| ||||||||| |||||||||||||| ||||||||    
T  56318864 aaaaatagggcgcgcgaggaaagacatagggtgggaaaagtaatagtc 56318911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 51890235 - 51890284
Alignment:
Q  150 ggaaaaataaggcgcgtgaggaaagatatagggtgggaaaaataatagtc 199  Q
    ||||||||| |||||| ||||||||  |||||||||||||| ||||||||    
T  51890235 ggaaaaatagggcgcgcgaggaaagtcatagggtgggaaaagtaatagtc 51890284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 3425503 - 3425407
Alignment:
Q  22 catctattcatcactgacatcttcattcattagggtg-atgaagtgccaaaatccacaaataaatccgaaattaatattccagaagtagttcagatt 117  Q
    ||||||||||| |||| |||| |||| ||| | |||| |||||||||||||| |||| ||||||||| ||| || || ||| ||| |||||| ||||    
T  3425503 catctattcataactggcatcatcatccatcatggtggatgaagtgccaaaaaccacgaataaatccaaaaatattactccggaactagttcggatt 3425407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 4049215 - 4049259
Alignment:
Q  152 aaaaataaggcgcgtgaggaaagatatagggtgggaaaaataata 196  Q
    ||||||| |||||| ||||||||| |||||||||||||| |||||    
T  4049215 aaaaatagggcgcgcgaggaaagacatagggtgggaaaagtaata 4049259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 33282133 - 33282177
Alignment:
Q  152 aaaaataaggcgcgtgaggaaagatatagggtgggaaaaataata 196  Q
    ||||||| |||||| ||||||||  ||||||||||||||||||||    
T  33282133 aaaaatagggcgcgcgaggaaaggcatagggtgggaaaaataata 33282177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 53513372 - 53513416
Alignment:
Q  152 aaaaataaggcgcgtgaggaaagatatagggtgggaaaaataata 196  Q
    ||||||| |||||| ||||||||| |||||||||||||| |||||    
T  53513372 aaaaatagggcgcgcgaggaaagacatagggtgggaaaagtaata 53513416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 32295821 - 32295645
Alignment:
Q  18 gattcatctattcatcactgacatcttcattcattagggtgatgaagtgccaaaatccacaaataaatccgaaattaatattccagaagtagttcagatt 117  Q
    ||||||||||||||||| | |||||||||| ||| ||||||||||||||||||||||||| ||||||| || |||||||||| | |||||||||||        
T  32295821 gattcatctattcatcatttacatcttcatccatgagggtgatgaagtgccaaaatccacgaataaattcggaattaatatttcggaagtagttca---- 32295726  T
Q  118 cagattatattttccaaacaaagagtattttggg-aaaaataaggcgcgtgaggaaagatatagggtgggaaaaataatagtc 199  Q
      ||||| ||||||   |||||| |||||||||| ||||||| |||| | |||||||| |||||||||| |||| ||||||||    
T  32295725 --gattaaattttcaggacaaagggtattttgggaaaaaatagggcgtgcgaggaaaggtatagggtggaaaaagtaatagtc 32295645  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 28791984 - 28791904
Alignment:
Q  19 attcatctattcatcactgacatcttcattcattagggtgatgaagtgccaaaatccacaaataaatccgaaattaatatt 99  Q
    ||||||||||||||||||||||||||||| ||| | ||||||||| ||||||||||||| |||||||||||||||||||||    
T  28791984 attcatctattcatcactgacatcttcatccatcatggtgatgaaatgccaaaatccacgaataaatccgaaattaatatt 28791904  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 10887947 - 10888034
Alignment:
Q  19 attcatctattcatcactgacatcttcattcattagggtg-atgaagtgccaaaatccacaaataaatccgaaattaatattccagaa 105  Q
    |||||| ||||||| |||  |||| |||| |||||| ||| ||||||||||||||||||| |||||||||| ||||||||||||||||    
T  10887947 attcatatattcataactctcatcatcatccattagagtggatgaagtgccaaaatccacgaataaatccggaattaatattccagaa 10888034  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 35067518 - 35067572
Alignment:
Q  22 catctattcatcactgacatcttcattcattagggtgatgaagtgccaaaatcca 76  Q
    ||||||||||| ||| |||||||||| ||| | ||||||||||||||||||||||    
T  35067518 catctattcattactcacatcttcatccatcaaggtgatgaagtgccaaaatcca 35067572  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 26114771 - 26114713
Alignment:
Q  22 catctattcatcactgacatcttcattcattagggtgatgaagtgccaaaatccacaaa 80  Q
    ||||||||||| ||| |||||||||| ||| ||  |||||||||||||||| |||||||    
T  26114771 catctattcataacttacatcttcatccatcagcatgatgaagtgccaaaaaccacaaa 26114713  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 28791900 - 28791819
Alignment:
Q  120 gattatattttccaaacaaagagtattttgggaaaaa--taaggcgcgtgaggaaagatatagggtgggaaaaataatagtc 199  Q
    |||||||||||||  |||||| |||||||||||||||  || |||||| |||||||  |||||  |||||||| ||||||||    
T  28791900 gattatattttccggacaaagggtattttgggaaaaaattagggcgcgcgaggaaatgtatagaatgggaaaagtaatagtc 28791819  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 50547821 - 50547879
Alignment:
Q  22 catctattcatcactgacatcttcattcattagggtgatgaagtgccaaaatccacaaa 80  Q
    ||||||||||| ||| |||||||||| ||| ||  | ||||||||||||||||||||||    
T  50547821 catctattcataacttacatcttcatccatcagtataatgaagtgccaaaatccacaaa 50547879  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 42093225 - 42093184
Alignment:
Q  19 attcatctattcatcactgacatcttcattcattagggtgat 60  Q
    |||||||||||||| |||||||||||||| ||| ||||||||    
T  42093225 attcatctattcattactgacatcttcatccatcagggtgat 42093184  T

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Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 40521715 - 40521538
Alignment:
Q  18 gattcatctattcatcactgacatcttcattcattagggtgatgaagtgccaaaatccacaaataaatccgaaattaatattccagaagtagttcagatt 117  Q
    |||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||| |||||||  | |||||||||||| |||||||      ||    
T  40521715 gattcatctattcatcactgacatcttcatccatcaaggtgatgaagtgccaaaatccacgaataaatatggaattaatattccggaagtag------tt 40521622  T
Q  118 cagattatattttccaaacaaagagtattttggg--aaaaataaggcgcgtgaggaaagatatagggtgggaaaaataatagtc 199  Q
    | ||||||||||| |  ||||||  |||||||||  ||||||| | |||  |||||||| |||||||||| |||| ||||||||    
T  40521621 cggattatatttttcggacaaaggatattttgggaaaaaaataggacgcacgaggaaaggtatagggtggaaaaagtaatagtc 40521538  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 36833657 - 36833736
Alignment:
Q  22 catctattcatcactgacatcttcattcattagggtgatgaagtgccaaaatccacaaataaatccgaaattaatattcc 101  Q
    ||||||||||| |||||||||||||| ||| | ||||||||||| ||||||||||||||  |||||| |||| |||||||    
T  36833657 catctattcattactgacatcttcatccatcatggtgatgaagttccaaaatccacaaaataatccggaatttatattcc 36833736  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 11077250 - 11077297
Alignment:
Q  152 aaaaataaggcgcgtgaggaaagatatagggtgggaaaaataatagtc 199  Q
    ||||||| |||||| |||||||||||||||||||||||| ||||||||    
T  11077250 aaaaatagggcgcgcgaggaaagatatagggtgggaaaagtaatagtc 11077297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 26218347 - 26218293
Alignment:
Q  145 ttttgggaaaaataaggcgcgtgaggaaagatatagggtgggaaaaataatagtc 199  Q
    |||||| ||||||| ||||||||| ||||||||||||||||||||| ||| ||||    
T  26218347 ttttggaaaaaatagggcgcgtgaagaaagatatagggtgggaaaagtaacagtc 26218293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 43097295 - 43097349
Alignment:
Q  18 gattcatctattcatcactgacatcttcattcattagggtgatgaagtgccaaaa 72  Q
    ||||||||||||||| ||| |||||||||||||| ||  ||||||||||||||||    
T  43097295 gattcatctattcataacttacatcttcattcatcagcatgatgaagtgccaaaa 43097349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 42279596 - 42279677
Alignment:
Q  26 tattcatcactgacatcttcattcattagggtg-atgaagtgccaaaatccacaaataaatccg-aaattaatattccagaa 105  Q
    ||||||| |||| |||| |||| ||| |||||| |||| |||||||||| ||| |||||||||| |||||||||||||||||    
T  42279596 tattcataactggcatcatcatccatcagggtggatgatgtgccaaaatacactaataaatccgaaaattaatattccagaa 42279677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 35683071 - 35683024
Alignment:
Q  152 aaaaataaggcgcgtgaggaaagatatagggtgggaaaaataatagtc 199  Q
    ||||||| |||||| ||||||||| |||||||||||||| ||||||||    
T  35683071 aaaaatagggcgcgcgaggaaagacatagggtgggaaaagtaatagtc 35683024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 34660492 - 34660434
Alignment:
Q  22 catctattcatcactgacatcttcattcattagggtgatgaagtgccaaaatccacaaa 80  Q
    ||||||||||| ||| |||||||||| ||| ||  |||||||||||||||| |||||||    
T  34660492 catctattcataacttacatcttcatccatcagcatgatgaagtgccaaaaaccacaaa 34660434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 36833765 - 36833828
Alignment:
Q  135 acaaagagtattttgggaaaaa--taaggcgcgtgaggaaagatatagggtgggaaaaataata 196  Q
    |||||||||||||||| |||||  || ||| || ||||||||| ||| ||||||||||||||||    
T  36833765 acaaagagtattttggaaaaaaaatagggcacgcgaggaaagacatatggtgggaaaaataata 36833828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 6941277 - 6941356
Alignment:
Q  22 catctattcatcactgacatcttcattcattagggtgatgaagtgccaaaatccacaaataaatccgaaattaatattcc 101  Q
    ||||||||||| |||| |||| |||| ||| ||||||||||||||||||||||||  |||||||||| |||| |||||||    
T  6941277 catctattcataactggcatcatcatccatcagggtgatgaagtgccaaaatccatgaataaatccggaattgatattcc 6941356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 440127 - 440174
Alignment:
Q  152 aaaaataaggcgcgtgaggaaagatatagggtgggaaaaataatagtc 199  Q
    ||||||| |||||| ||||||||| |||||||||||||| ||||||||    
T  440127 aaaaatagggcgcgcgaggaaagacatagggtgggaaaagtaatagtc 440174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 38702664 - 38702617
Alignment:
Q  152 aaaaataaggcgcgtgaggaaagatatagggtgggaaaaataatagtc 199  Q
    ||||||| |||||||||||||||| |||||||||||||| ||||||||    
T  38702664 aaaaatagggcgcgtgaggaaagacatagggtgggaaaagtaatagtc 38702617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 38209411 - 38209458
Alignment:
Q  152 aaaaataaggcgcgtgaggaaagatatagggtgggaaaaataatagtc 199  Q
    ||||||| |||||| ||||||||| |||||||||||||| ||||||||    
T  38209411 aaaaatagggcgcgcgaggaaagacatagggtgggaaaagtaatagtc 38209458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 194
Target Start/End: Complemental strand, 25715264 - 25715222
Alignment:
Q  152 aaaaataaggcgcgtgaggaaagatatagggtgggaaaaataa 194  Q
    ||||||| ||||||| |||||||| ||||||||||||||||||    
T  25715264 aaaaatagggcgcgttaggaaagacatagggtgggaaaaataa 25715222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 44761133 - 44761165
Alignment:
Q  167 gaggaaagatatagggtgggaaaaataatagtc 199  Q
    |||||||| ||||||||||||||||||||||||    
T  44761133 gaggaaaggtatagggtgggaaaaataatagtc 44761165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 31187223 - 31187165
Alignment:
Q  22 catctattcatcactgacatcttcattcattagggtgatgaagtgccaaaatccacaaa 80  Q
    ||||||||||| ||| |||||||||| ||| ||  ||||||||||||||||||||||||    
T  31187223 catctattcataacttacatcttcatccatcagcctgatgaagtgccaaaatccacaaa 31187165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 38247193 - 38247146
Alignment:
Q  152 aaaaataaggcgcgtgaggaaagatatagggtgggaaaaataatagtc 199  Q
    ||||||| |||||| ||||||||| |||||||||||||| ||||||||    
T  38247193 aaaaatagggcgcgcgaggaaagacatagggtgggaaaagtaatagtc 38247146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 46255940 - 46255987
Alignment:
Q  152 aaaaataaggcgcgtgaggaaagatatagggtgggaaaaataatagtc 199  Q
    ||||||| |||||| ||||||||| ||||||||| |||||||||||||    
T  46255940 aaaaatagggcgcgcgaggaaagacatagggtggaaaaaataatagtc 46255987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 190
Target Start/End: Complemental strand, 8658 - 8620
Alignment:
Q  152 aaaaataaggcgcgtgaggaaagatatagggtgggaaaa 190  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  8658 aaaaatagggcgcgtgaggaaagacatagggtgggaaaa 8620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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