View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7107_low_11 (Length: 349)
Name: NF7107_low_11
Description: NF7107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7107_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 13 - 339
Target Start/End: Original strand, 44760425 - 44760751
Alignment:
| Q |
13 |
atcaaggatcttatggatgcagtaagatatatagttcgttattgttttaggttttaatccagtttctttacttgtgatgctagccctaattataaatctg |
112 |
Q |
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| T |
44760425 |
atcaaggatcttatggatgcagtaagatatataattcgttattgttttaggttttaatccagtttctttacttgtgatgctagccctaattataaatctg |
44760524 |
T |
|
| Q |
113 |
acaattggccaagccttatattaatcttgcatgtaacaggcagatatagataataatgggacacttgactatggcgaattcattgctgctactgtgcact |
212 |
Q |
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| T |
44760525 |
acaattggccaagccttatattaatcttgcatgtaacaggcagatatagataataacgggacacttgactatggcgaattcattgctgctactgtgcact |
44760624 |
T |
|
| Q |
213 |
taaataagctggagagagaggaaaatctgttgtcggcattctcctactttgacaaagattgtagcggttacataaccatcgacgagattcaagcagcttg |
312 |
Q |
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| T |
44760625 |
taaataagctggagagagaggaaaatctgttgtcggcattctcctactttgacaaagattgtagcggttacataaccatcgatgagattcaagcagcctg |
44760724 |
T |
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| Q |
313 |
taaagagtttggcttagatgatgtcca |
339 |
Q |
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| T |
44760725 |
taaagagtttggcttagatgatgtcca |
44760751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 16 - 340
Target Start/End: Original strand, 44769552 - 44769875
Alignment:
| Q |
16 |
aaggatcttatggatgcagtaagatatatagttcgttattgttttaggttttaatccagtttctttacttgtgatgcta-gccctaattataaatctgac |
114 |
Q |
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| T |
44769552 |
aaggatcttatggatgcagtaagataaatagttaattattgttttaggttttaaaccagttttgttatctgtgatgctttgcgcaaattataaacttgac |
44769651 |
T |
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| Q |
115 |
aattggccaagccttatattaatcttgcatgtaacaggcagatatagataataatgggacacttgactatggcgaattcattgctgctactgtgcactta |
214 |
Q |
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| T |
44769652 |
aattggacaagacttata--aatgttgcatgtgacaggcagacattgataataacgggacacttgactatggtgaattcattgctgctactgtccactta |
44769749 |
T |
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| Q |
215 |
aataagctggagagagaggaaaatctgttgtcggcattctcctactttgacaaagattgtagcggttacataaccatcgacgagattcaagcagcttgta |
314 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| | || |||||||||||||| |||||||| || |||||||||| |
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| T |
44769750 |
aataagctggagagagaggaaaatctattgtcagcattctcgtactttgacaaagatggaagtggttacataaccattgacgagatacaggcagcttgta |
44769849 |
T |
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| Q |
315 |
aagagtttggcttagatgatgtccat |
340 |
Q |
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| T |
44769850 |
aggagtttggtttggacgatgtccat |
44769875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 148 - 340
Target Start/End: Original strand, 39943769 - 39943961
Alignment:
| Q |
148 |
acaggcagatatagataataatgggacacttgactatggcgaattcattgctgctactgtgcacttaaataagctggagagagaggaaaatctgttgtcg |
247 |
Q |
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| T |
39943769 |
acaggcggatgttgataaaagtgggacaattgactatggtgaattcattgctgcaactgttcatttaaataagctggagagagaggaaaacctgttgtca |
39943868 |
T |
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| Q |
248 |
gcattctcctactttgacaaagattgtagcggttacataaccatcgacgagattcaagcagcttgtaaagagtttggcttagatgatgtccat |
340 |
Q |
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| T |
39943869 |
gccttcgcttattttgacaaagatgctagtggttacataaccattgatgagatttcacaagcttgtaaggactttggtttagatgatatccat |
39943961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 325
Target Start/End: Complemental strand, 43463031 - 43462855
Alignment:
| Q |
149 |
caggcagatatagataataatgggacacttgactatggcgaattcattgctgctactgtgcacttaaataagctggagagagaggaaaatctgttgtcgg |
248 |
Q |
| |
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||||| |||||||| || ||||| ||| | |||||||| ||||| | || ||||| ||||||| |||||| |||| |||||||| || || | | | |
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| T |
43463031 |
caggctgatatagacaacaatggaacaatagactatggtgaatttctcgcggctacactgcacttgaataagatggaaagagaggagaacttggttgcag |
43462932 |
T |
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| Q |
249 |
cattctcctactttgacaaagattgtagcggttacataaccatcgacgagattcaagcagcttgtaaagagtttggc |
325 |
Q |
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| T |
43462931 |
cttttgcctattttgacaaagacggtagcggttacatcaccattgacgagcttcaacaagcttgcaaagactttggc |
43462855 |
T |
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