View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7107_low_12 (Length: 343)
Name: NF7107_low_12
Description: NF7107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7107_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 12 - 333
Target Start/End: Original strand, 39083118 - 39083442
Alignment:
| Q |
12 |
acatcagattaatgacagcgtaaaattacaggtatccattcaatgctgtgaatgcgcatttattccctgtttat---tgactattaccacttgacacaaa |
108 |
Q |
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| T |
39083118 |
acatcagattaatgatagcgtaaaattacaggtatccattcaatgctgtgaatgcgcatttattccctgtttattattgactattaccacttgacacaaa |
39083217 |
T |
|
| Q |
109 |
aatctcacttcattatttttaaagttatagttacataattgattatactaaccacaaacaacaaaagcttaattttaacaaggtgagatgtcaccattat |
208 |
Q |
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| T |
39083218 |
aatctcacttcattatttttaaagttatagttacataattgattatactaaccacaaacaacaaaaacttaattttaacaaggtgagatgtcaccattat |
39083317 |
T |
|
| Q |
209 |
accacccataaataaaaatcaatctacataaccaaataagttatttagttgaactgttcctttatttccttttcctgtttggtaaacatgattagtaatc |
308 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39083318 |
accacccataaataaaaatctatctacataaccaaataagttatttagttgaactgttcctttatttccttttcctgtttggtaaacatgattagtaatc |
39083417 |
T |
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| Q |
309 |
acaatccttaatttccttagctata |
333 |
Q |
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||||||||||||||||||||||||| |
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| T |
39083418 |
acaatccttaatttccttagctata |
39083442 |
T |
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