View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7107_low_18 (Length: 224)
Name: NF7107_low_18
Description: NF7107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7107_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 3 - 209
Target Start/End: Original strand, 11321706 - 11321912
Alignment:
| Q |
3 |
cttaaccgcagccttcatctccttggcagtcatcattgttaacttcatacttgaagtagcattggaggattcgtgaataagcttcatcatcacattactt |
102 |
Q |
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| T |
11321706 |
cttaacggcagcattcatctccttagcagtcatcattgttaacttcttacttgaagtaacgttggaggattcgtgaataagcttcatcatcacattactt |
11321805 |
T |
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| Q |
103 |
atcataatattcatcatatcgatggccccggtggagatagcaatgtccgggtgcacctgcttcagaactttgcagatgtgttcattgaacatgaaaatct |
202 |
Q |
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| T |
11321806 |
atcataatattcatcatatccatggccccgacgaagatagcaatgtccgggtgttcctgctccagaactttgtagatgtattcattgaacatgaatatct |
11321905 |
T |
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| Q |
203 |
tcttctc |
209 |
Q |
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||||||| |
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| T |
11321906 |
tcttctc |
11321912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 23402136 - 23402091
Alignment:
| Q |
136 |
gagatagcaatgtccgggtgcacctgcttcagaactttgcagatgt |
181 |
Q |
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| T |
23402136 |
gagataccaatgtctgggtgaacctgcttcagaactttgaagatgt |
23402091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 23415925 - 23415970
Alignment:
| Q |
136 |
gagatagcaatgtccgggtgcacctgcttcagaactttgcagatgt |
181 |
Q |
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| T |
23415925 |
gagataccaatgtctgggtgaacctgcttcagaactttgaagatgt |
23415970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 23868794 - 23868749
Alignment:
| Q |
136 |
gagatagcaatgtccgggtgcacctgcttcagaactttgcagatgt |
181 |
Q |
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|||||| ||||||| ||||| |||||||||||||||||| |||||| |
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| T |
23868794 |
gagataccaatgtctgggtgaacctgcttcagaactttgaagatgt |
23868749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 23885889 - 23885844
Alignment:
| Q |
136 |
gagatagcaatgtccgggtgcacctgcttcagaactttgcagatgt |
181 |
Q |
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|||||| ||||||| ||||| |||||||||||||||||| |||||| |
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| T |
23885889 |
gagataccaatgtctgggtgaacctgcttcagaactttgaagatgt |
23885844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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