View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7107_low_2 (Length: 679)

Name: NF7107_low_2
Description: NF7107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7107_low_2
NF7107_low_2
[»] chr3 (8 HSPs)
chr3 (63-307)||(564506-564750)
chr3 (63-307)||(531925-532169)
chr3 (500-668)||(531084-531252)
chr3 (500-668)||(564039-564207)
chr3 (305-440)||(564267-564402)
chr3 (361-441)||(531311-531391)
chr3 (305-360)||(531732-531787)
chr3 (343-403)||(46506160-46506220)
[»] chr7 (4 HSPs)
chr7 (346-438)||(34955422-34955514)
chr7 (363-444)||(3756679-3756761)
chr7 (529-618)||(32471249-32471336)
chr7 (367-443)||(42863834-42863910)
[»] chr8 (1 HSPs)
chr8 (501-601)||(32848033-32848131)
[»] chr5 (1 HSPs)
chr5 (501-616)||(34272289-34272402)
[»] chr1 (1 HSPs)
chr1 (505-581)||(49138139-49138212)


Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 63 - 307
Target Start/End: Complemental strand, 564750 - 564506
Alignment:
Q  63 aactagatctgttgttctaatagcattgttgaagaactaaactgatgatagaaatatttcatgtaacaaactgatagaaactaatttaatatgtaagtct 162  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  564750 aactagatctgttgttctaatagcattggtgaagaactaaactgatgatagaaatatttcctgtaacaaactgatagaaactaatttaatatgtaagtct 564651  T
Q  163 aagcttgaataattgaagaactatattgtgaaagcaagaaggtgagtcgttcttgatagagtctatagtgaaagcaagaagcagactcattcttgacaaa 262  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  564650 aagcttgaataattgaagaactaaattgtgaaagcaagaaggtgagtcgttcttgatagagtctatagtgaaagcaagaagcagactcattcttgacaaa 564551  T
Q  263 gctgctcctaaaactttgaagttttgtaaaagtaatcatttgata 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  564550 gctgctcctaaaactttgaagttttgtaaaagtaatcatttgata 564506  T

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Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 63 - 307
Target Start/End: Complemental strand, 532169 - 531925
Alignment:
Q  63 aactagatctgttgttctaatagcattgttgaagaactaaactgatgatagaaatatttcatgtaacaaactgatagaaactaatttaatatgtaagtct 162  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  532169 aactaggtctgttgttctaatagcattgttgaagaactaaactgatcatagaattatttcatgtaacaaactgatagaaactgatttaatatgtaagtct 532070  T
Q  163 aagcttgaataattgaagaactatattgtgaaagcaagaaggtgagtcgttcttgatagagtctatagtgaaagcaagaagcagactcattcttgacaaa 262  Q
    ||| ||||||||||||||||||| |||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  532069 aagattgaataattgaagaactaaattgtgaaagaaagaaggtgcgtcgttcttaatagagtctatagtgaaagcaagaagcagactcattcttgacaaa 531970  T
Q  263 gctgctcctaaaactttgaagttttgtaaaagtaatcatttgata 307  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  531969 gctgctcctaaaacttcgaagttttgtaaaagtaatcatttgata 531925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 500 - 668
Target Start/End: Complemental strand, 531252 - 531084
Alignment:
Q  500 cttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttggttttaggatcgttagccgcatgtccat 599  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  531252 cttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttgattttaggatcgttagccgcatgtccat 531153  T
Q  600 ttgccaaaaccaattatatcaagcttctttgtattttcaaattaaaaaatggatatgcaccttcttctt 668  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  531152 ttgccaaaaccaattatatcaagcttctttgtatttttcaattaaaaaatggatatgcaccttcttctt 531084  T

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Target: chr3; HSP #4
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 500 - 668
Target Start/End: Complemental strand, 564207 - 564039
Alignment:
Q  500 cttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttggttttaggatcgttagccgcatgtccat 599  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  564207 cttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttgattttaggatcgttagccgcatgtccat 564108  T
Q  600 ttgccaaaaccaattatatcaagcttctttgtattttcaaattaaaaaatggatatgcaccttcttctt 668  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  564107 ttgccaaaaccaattatatcaagcttctttgtatttttcaattaaaaaatggatatgcaccttcttctt 564039  T

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Target: chr3; HSP #5
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 305 - 440
Target Start/End: Complemental strand, 564402 - 564267
Alignment:
Q  305 atatcctaatcaataatccaattgtctgtaagagttcccacaattgacaatgtaacaaatggataattgcaaattaattattgaatgaaatataaaattt 404  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  564402 atatcctaatcaataatccaattgtctgtaagagttacaacaattgacaatgtaacaaatggataattgcaaattaattattgaatgaaatataaaattt 564303  T
Q  405 gtatatgagaacccaattagatttggtgttcttagt 440  Q
    ||||||||||||||||||||||||||||||||||||    
T  564302 gtatatgagaacccaattagatttggtgttcttagt 564267  T

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Target: chr3; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 361 - 441
Target Start/End: Complemental strand, 531391 - 531311
Alignment:
Q  361 aaatggataattgcaaattaattattgaatgaaatataaaatttgtatatgagaacccaattagatttggtgttcttagta 441  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  531391 aaatggatgattgcaaattaattattgaatgaaatataaaatttgtatatgacaacccaattagatttggtgtccttagta 531311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 305 - 360
Target Start/End: Complemental strand, 531787 - 531732
Alignment:
Q  305 atatcctaatcaataatccaattgtctgtaagagttcccacaattgacaatgtaac 360  Q
    |||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||    
T  531787 atatcctagtcaataatcgaattgtcagtaagagttcccacaattgacaatgtaac 531732  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 343 - 403
Target Start/End: Complemental strand, 46506220 - 46506160
Alignment:
Q  343 cacaattgacaatgtaacaaatggataattgcaaattaattattgaatgaaatataaaatt 403  Q
    ||||||||| | ||||| ||||||||| ||| |||||||||||| ||| ||| ||||||||    
T  46506220 cacaattgatagtgtaataaatggatagttggaaattaattattcaatcaaagataaaatt 46506160  T

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Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 346 - 438
Target Start/End: Original strand, 34955422 - 34955514
Alignment:
Q  346 aattgacaatgtaacaaatggataattgcaaattaattattgaatgaaatataaaatttgtatatgagaacccaattagatttggtgttctta 438  Q
    ||||| ||||||||| | | ||||||||||||||||||||||||||||||||||||||| || || ||||| ||||| |||||||||||||||    
T  34955422 aattggcaatgtaactagtagataattgcaaattaattattgaatgaaatataaaatttataaataagaactcaattggatttggtgttctta 34955514  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 363 - 444
Target Start/End: Original strand, 3756679 - 3756761
Alignment:
Q  363 atggataattgcaaattaattattgaatgaaatataaaatttg-tatatgagaacccaattagatttggtgttcttagtacat 444  Q
    ||||||||||||||||| |||||| ||| |||  ||||| ||| || |||||||  |||||||| ||||||||||||||||||    
T  3756679 atggataattgcaaattgattattaaattaaaggtaaaaattgatagatgagaattcaattagagttggtgttcttagtacat 3756761  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 529 - 618
Target Start/End: Original strand, 32471249 - 32471336
Alignment:
Q  529 gatcatcattttcctctttatatgcacattccaagcttccttggttttaggatcgttagccgcatgtccatttgccaaaaccaattatat 618  Q
    |||||||||||  |||| | |||||||| |||||||||||||| ||||||||||  || |  ||||||||||||||  ||||||| ||||    
T  32471249 gatcatcattt--ctctatttatgcacaatccaagcttccttgattttaggatcactaactacatgtccatttgcctcaaccaataatat 32471336  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 367 - 443
Target Start/End: Complemental strand, 42863910 - 42863834
Alignment:
Q  367 ataattgcaaattaattattgaatgaaatataaaatttgtatatgagaacccaattagatttggtgttcttagtaca 443  Q
    ||||||||||||||||||| |||| ||||||  ||||  || |  |||| ||||||||| ||||| |||||||||||    
T  42863910 ataattgcaaattaattatggaatcaaatattgaattgatagacaagaatccaattagagttggtattcttagtaca 42863834  T

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Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 501 - 601
Target Start/End: Original strand, 32848033 - 32848131
Alignment:
Q  501 ttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttggttttaggatcgttagccgcatgtccatt 600  Q
    ||||||||||||||| ||||||||||| |||||||||||  |||| | |||||||| ||||| |||||||| |||||||||| | |||| ||||| ||||    
T  32848033 ttcatcaattttcttgatacccattattgatcatcattt--ctctatttatgcacaatccaaacttccttgattttaggatcatgagccacatgttcatt 32848130  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 501 - 616
Target Start/End: Complemental strand, 34272402 - 34272289
Alignment:
Q  501 ttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttggttttaggatcgttagccgcatgtccatt 600  Q
    |||||||||||||||||||||||||||   | |||||||| || |||||  ||||| || |||| |||||| ||||||||||  ||| | ||||||||||    
T  34272402 ttcatcaattttcttcatacccattattatttatcatttttctatttat--gcacaatctaagcatccttgattttaggatcactagtcacatgtccatt 34272305  T
Q  601 tgccaaaaccaattat 616  Q
    | || |||||||||||    
T  34272304 tacctaaaccaattat 34272289  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 505 - 581
Target Start/End: Complemental strand, 49138212 - 49138139
Alignment:
Q  505 tcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttggttttaggat 581  Q
    ||||||||||||||||||||||| ||| ||||||||||| ||  |||| ||| |||||||||||||  |||||||||    
T  49138212 tcaattttcttcatacccattattgat-atcattttcctatt--tatgtacaatccaagcttcctttattttaggat 49138139  T

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