View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7107_low_3 (Length: 642)
Name: NF7107_low_3
Description: NF7107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7107_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 20 - 631
Target Start/End: Original strand, 42683306 - 42683917
Alignment:
| Q |
20 |
ctagggttgtgatttagttattatatttttcctaaattttcaagttgcttaatagattttaatggatgttgtagaaaatcttgttccttaatttaacaac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42683306 |
ctagggttgtgatttagttattatatttttcctaaattttcaagttgcttaatagatttttatggatgttgtagaaaatcttgttccttaatttaacaac |
42683405 |
T |
|
| Q |
120 |
ttttactaggcaagcaacatgcattggtttcatatattaaatgttgtaatgtatcaataagagcaaaatttaaacataattctcattattgcaaatgatc |
219 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42683406 |
ttttactatgcaagcaacatgcattggtttcatatattaaatgttgtaatgtatcaataagagcaaaatttaaacataattctcattattgcaaatgatc |
42683505 |
T |
|
| Q |
220 |
atgttgttgattgtgataaatgaatgaaaggattgtaattttcaggagacaatgagaagtgcaatgatagactcgactattcgtgttactgacaatggaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42683506 |
atgttgttgattgtgataaatgaatgaaaggattgtaattttcaggagccaatgagaagtgcaatgatagactcgactattcgtgttactgacaatggaa |
42683605 |
T |
|
| Q |
320 |
gggagagtattaacaaaaaagtaagaaacttaggatgttgatattctgattacattaattttcaatggcgtttgtttctttgagcaattaattgaattta |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42683606 |
gggagagtattaacaaaaaagtaagaaacttaggatgttgatattctgattacattaattttcaatggcgtttgtttctttgagcaattaattgaattta |
42683705 |
T |
|
| Q |
420 |
gaaatttgtttgcaattcacaggtattatttattttcactgtatgtaatacttcaaatcaaagggataagcttaaggtttgtcacaactaaaaattcaaa |
519 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42683706 |
gaaatttatttgcaattcacaggtattatttattttcactgtatgtaatacttcaaatcaaagggataagcttaaggtttgtcaaaactaaaaattcaaa |
42683805 |
T |
|
| Q |
520 |
caagttttttagtcgaaatttattttcattagattgattcatggtttaaattccatatatttatagttgggagcacgtagttcagaagaagctgcaaaat |
619 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42683806 |
caagttttttagtcaaaatttattttcattagattgattcatggtttaaattccatatatttatagttgggagcacgtagttcagaagaagctgcaaaat |
42683905 |
T |
|
| Q |
620 |
ggatacgttctt |
631 |
Q |
| |
|
|||||||||||| |
|
|
| T |
42683906 |
ggatacgttctt |
42683917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University