View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7107_low_5 (Length: 561)
Name: NF7107_low_5
Description: NF7107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7107_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 197 - 545
Target Start/End: Original strand, 25413928 - 25414275
Alignment:
| Q |
197 |
ggcctataggatgaagcaaaagagaccataagtttgagttcaactcaacacagagacaacatagggagatcatgccagaaagaggagattgaagatggtc |
296 |
Q |
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| T |
25413928 |
ggcctataggatgaagcaaaagagaccataagtttgagttcaactcaacacagagacaacataggaagatcatgccagaaagaggagattgaagatggtc |
25414027 |
T |
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| Q |
297 |
ggttggtgtctaataattcaaggaactctaatcaatctgaaggcagtagaggttcttttgcattccctgagtaagttaatattatcagtgttgtaataat |
396 |
Q |
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| T |
25414028 |
ggttggtgtctaataattcaaggaactctaatcaatctgaaggcagtagaggttcttttgcattccctgagtaagttaatattatcagtgttgtaataat |
25414127 |
T |
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| Q |
397 |
tttcttatggcaaaaatgcatcttctataataatagctacttagtttacaataccctaaaccctaaaccctataacatgaatagattctgtaggagccag |
496 |
Q |
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| T |
25414128 |
tttcttatggcaaaaatgcatctataataataatagcaacttagttaacaataccctaaaccctaaaccctataacat-aatagattatgtagcagccag |
25414226 |
T |
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| Q |
497 |
aatttcattcaatggttgaaatccgacaaatctgtgattgcataatatt |
545 |
Q |
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| T |
25414227 |
aatttcattcaatggttgaaatccgacaaatctgtgattgaataatatt |
25414275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 23 - 169
Target Start/End: Original strand, 25413749 - 25413899
Alignment:
| Q |
23 |
accaacacatagagaagcatatatcaaatgcaaaccagcatcatactgatcaacatgacatagtttacttgacccctatcaaagaggttcgtcgccaccg |
122 |
Q |
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| T |
25413749 |
accaacacatagagaagcatatatcaaatgcaaaccagcatgatactgatcaacatgacatagtttacttgacccctatcaaagaggttcgtcgccaccg |
25413848 |
T |
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| Q |
123 |
taaata----ttttttctatgttttatgcattagtgtcatcaatcatacta |
169 |
Q |
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| T |
25413849 |
taaatattttttttttctatgttttatgcattagtgtcatcaatcaaacta |
25413899 |
T |
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