View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7107_low_7 (Length: 464)
Name: NF7107_low_7
Description: NF7107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7107_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 153 - 453
Target Start/End: Original strand, 25414358 - 25414653
Alignment:
| Q |
153 |
gggtaggcacaataccatataagattttgagtttaacctaattgaacacttataaaactgatttgtaaggtgacaactatccaccagttacaaacacata |
252 |
Q |
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| T |
25414358 |
gggtaggcacgataccatctaagattttgagtttaacctaactaaacccttataaaaccgatttgtaaggtgacaactatccacaagttacaaacacat- |
25414456 |
T |
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| Q |
253 |
ttcagattttatctcttctaacaaacaattcacccatcacataaaatttatttgggtcctaacctattcaagtaggatacattccaaaaataatatgcta |
352 |
Q |
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| T |
25414457 |
-tcagattttatctcttctaacaaacaattcacccatcacataaaatttatttgggtcctaacctattcaagtaggatacattccaaaaataatatgcta |
25414555 |
T |
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| Q |
353 |
cactataatttaaatcaaaaggagaatgtgttaatgaaatttatttgggtgctaacgacctaacctattattgttgctattttgtgtgaatgacacaggt |
452 |
Q |
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| T |
25414556 |
cactataatttaaatcaaaaggagaatgtgttaatgaaatttatttgggttctaacgacctaacc---tattgttgctattttgtgtgaatgacacaggt |
25414652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 25414252 - 25414359
Alignment:
| Q |
1 |
acaaatctgtgattgcataatatttttggaaactgggttgtaaggttagactgtcccggctacaaaacttttaaaacatctccctcacgcgtaagacatg |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25414252 |
acaaatctgtgattgaataatatttttggaaactgggttgtaaggttagactgtctccgctacaaaacttttaaaacatctccctcacgcgtaagacatg |
25414351 |
T |
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| Q |
101 |
acatttgg |
108 |
Q |
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| T |
25414352 |
acatttgg |
25414359 |
T |
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