View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7108_high_4 (Length: 214)
Name: NF7108_high_4
Description: NF7108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7108_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 144; Significance: 7e-76; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 1684681 - 1684480
Alignment:
| Q |
13 |
tctgataacaatgttggtatttcatggcactaccggcaggtctttaattgttggtattgtttgtgatgtcttcaacatattgatgtatatttctcctctt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1684681 |
tctgataacaatgttggtatttcatggcactaccggcaggtctttaattgttggtattgtttgtgatgtcttcaacatattgatgtatatttctcctctt |
1684582 |
T |
|
| Q |
113 |
acaatcatggtaagta---------------actttatattcagatatgaattatgctgtatcttataaagtattttccctaaacttgttacatatgata |
197 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1684581 |
acaatcatggtaagtaacttctattccaataactttatattcagatatgaattatactgtatcttataaagtattttctctaaacttgttacatatgata |
1684482 |
T |
|
| Q |
198 |
tg |
199 |
Q |
| |
|
|| |
|
|
| T |
1684481 |
tg |
1684480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 1695104 - 1694985
Alignment:
| Q |
13 |
tctgataacaatgttggtatttcatggcactaccggcaggtctttaattgttggtattgtttgtgatgtcttcaacatattgatgtatatttctcctctt |
112 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
1695104 |
tctgataacaatgttggcattacatggcactaccaagaggtctttaattgttgggattatttgtgatatcttcaacatattgatgtatgcttctcctctt |
1695005 |
T |
|
| Q |
113 |
acaatcatggtaagtaactt |
132 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
1695004 |
acgatcatggtaagtaactt |
1694985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 1700206 - 1700096
Alignment:
| Q |
17 |
ataacaatgttggtatttcatggcactaccggcaggtctttaattgttggtattgtttgtgatgtcttcaacatattgatgtatatttctcctcttacaa |
116 |
Q |
| |
|
||||||||||||| | |||||||||||| || || |||||||||||| || | |||||||||||||| | |||||||| ||||||||||||| |
|
|
| T |
1700206 |
ataacaatgttggcacttcatggcactaaaaaaagatcgttaattgttggtgttctatgtgatgtcttcaatgtcatgatgtatgcatctcctcttacaa |
1700107 |
T |
|
| Q |
117 |
tcatggtaagt |
127 |
Q |
| |
|
||||||||||| |
|
|
| T |
1700106 |
tcatggtaagt |
1700096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 1971085 - 1971025
Alignment:
| Q |
72 |
tttgtgatgtcttcaacatattgatgtatatttctcctcttacaatcatggtaagtaactt |
132 |
Q |
| |
|
|||||||| ||||| ||||||||||||| | ||||||||||| ||| ||||||||||||| |
|
|
| T |
1971085 |
tttgtgatatcttccccatattgatgtatgtctctcctcttaccatcgtggtaagtaactt |
1971025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 43151576 - 43151628
Alignment:
| Q |
81 |
tcttcaacatattgatgtatatttctcctcttacaatcatggtaagtaacttt |
133 |
Q |
| |
|
|||| |||||| | |||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
43151576 |
tcttgaacataattatgtatatctctcctcttacagtcatggtaagtaacttt |
43151628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University