View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7109_high_8 (Length: 360)
Name: NF7109_high_8
Description: NF7109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7109_high_8 |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: scaffold0286 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 13369 - 13132
Alignment:
| Q |
3 |
tggctagattatacttaccacacaatcgaactttgaattacaagagcctcttccctgaaaatgggaggggttaacacccaacaaatatccatgcattatc |
102 |
Q |
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| T |
13369 |
tggccagattatacttaccacatgaccaaacattgaattacaagagcctcttccctgaaaatgggaggggttaacacccaacaaatatccatgcattatc |
13270 |
T |
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| Q |
103 |
agatgcaggttgaattgttttttctaaaggtaaatagatataaacaaacctgaacgggaaaaaacactctctggaatagaacagaatacaaagggaaaag |
202 |
Q |
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| T |
13269 |
agatgcaggttgaattgttttttctaaaggtaaatagatatatacaaacctgaacgggaaaaaacactctccggaatagaacagaatacaaagagaaaag |
13170 |
T |
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| Q |
203 |
ctacatacaagtctgtgccctacaggaactcaggggac |
240 |
Q |
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| T |
13169 |
ctacatacaagtctgtgccctacaggaactcgggggac |
13132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 3 - 240
Target Start/End: Original strand, 2169893 - 2170130
Alignment:
| Q |
3 |
tggctagattatacttaccacacaatcgaactttgaattacaagagcctcttccctgaaaatgggaggggttaacacccaacaaatatccatgcattatc |
102 |
Q |
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|||| ||||||||||||||||| | | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2169893 |
tggccagattatacttaccacatgaccaaacattgaattacaagagcctcttccctgaaaatgggaggggttaacacccaacaaatatccatgcattatc |
2169992 |
T |
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| Q |
103 |
agatgcaggttgaattgttttttctaaaggtaaatagatataaacaaacctgaacgggaaaaaacactctctggaatagaacagaatacaaagggaaaag |
202 |
Q |
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| T |
2169993 |
agatgcaggttgaattgttttttctaaaggtaaatagatatatacaaacctgaacgggaaaaaacactctccggaatagaacagaatacaaagagaaaag |
2170092 |
T |
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| Q |
203 |
ctacatacaagtctgtgccctacaggaactcaggggac |
240 |
Q |
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| T |
2170093 |
ctacatacaagtctgtgccctacaggaactcgggggac |
2170130 |
T |
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