View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7109_low_1 (Length: 775)
Name: NF7109_low_1
Description: NF7109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7109_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 662; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 1 - 756
Target Start/End: Complemental strand, 21056180 - 21055429
Alignment:
| Q |
1 |
ttttctatatctaatctactttactataagcatgccattgtcaagttaaactcaaacactccaatgctgcttgcagtaagtaaacttatccgcaactcca |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
21056180 |
ttttctatatctaatctactttacaataagcatgccattgtcaagttaaactcaaacactccaatgcaacttccagtaagtaaacttatccgcaactcca |
21056081 |
T |
|
| Q |
101 |
aaaatagaggtatacaatgcatcactggagtacattgttgtttcacagtccaatgcagtgacttatcaaaaaacaaattatcacacaaccaaataatatc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21056080 |
aaaatagaggtatacaatgcatcactggagcacattgttgtttcacagtccaatgcagtgacttatcaaaaaacaaattatcacacaaccaaataatatc |
21055981 |
T |
|
| Q |
201 |
attcatatagggaaattagaaatggggtaaatgcgagtaaatatcatatagtgccggcataaaaaattagatatataaagcagcaagaaataaaccagat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21055980 |
attcatatagggaaattagaaatggggtaaatgcgagtaaatatcatatagtgccggcataaaaaattagatatataaagcagcaagaaataaaccagat |
21055881 |
T |
|
| Q |
301 |
acatnnnnnnncacccaatattgtgggactcctactctcacaggtctcagatacataatcagaaattgcaacatcaattcagaatgagagtccaaagtat |
400 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21055880 |
gcat----aaacacccaatattgtgggactcctactctcacaggtctcagatgcataatcagcaattgcaacatcaattcagaatgagagtccaaagtat |
21055785 |
T |
|
| Q |
401 |
tttctgaattttaaaaatttcagtgacacctttaactagtaaaaatctctatgcatgagataattccaccttttttggtgtatttttcaattctttactg |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21055784 |
tttctgaattttaaaaatttcagtgacacctttaaccagtaaaaatctctatgcatgagataattccaccttttttggtgtatttttcaatgctttactg |
21055685 |
T |
|
| Q |
501 |
tgagtagtaaaatgcctcattaaaatacttnnnnnnnngtctgtcttctaaagcatcaaaaaggagcattttattagatacatcctttcaaaaagtatat |
600 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21055684 |
tgagtagtaaaatgcctcattaaaatacttaaaaaaaagtctgtcttctaaagcatcaaaaaggagcattttattagatacatcctttcaaaaagtatat |
21055585 |
T |
|
| Q |
601 |
atgtactttccctcccatgttattcctcatctaaacacacaatggttaagtttatgaatgatgacataagataatttacagtttagttgatagttttgaa |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21055584 |
atgtactttccctcccatgttattcctcatctaaacacacaacggttaagtttatgaatgatgacataagataatttacagtttagttgatagttttgaa |
21055485 |
T |
|
| Q |
701 |
tctggggatcaatgtatgttgatagaggatatcttgttgcagataaaggtggtagg |
756 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21055484 |
tctggggatcaatgtatgttgatagaggatatcttgttgcagataaaggtggtagg |
21055429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 120; Significance: 5e-61; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 444 - 736
Target Start/End: Original strand, 26363614 - 26363912
Alignment:
| Q |
444 |
aatctctatgcatgagataattccaccttttttggtgtatttttcaattctttactgtgagtagtaaaatgcctcattaaaatacttnnnnnnnn--gtc |
541 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
26363614 |
aatctctattcatgtgataattccaccttttttggtggatttttcaattctttattgtgagtagtaaaatgcctcattaaaatacttcaaattttaagtc |
26363713 |
T |
|
| Q |
542 |
tgtcttctaaagcatcaaaaa-ggagcattttattagatacatcctttcaaaa-agtatatatgtactttccctcccatgttattcctcatctaaacaca |
639 |
Q |
| |
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|| ||| |||| ||| ||||| |||||||||||||||| | |||||||||||| | ||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
26363714 |
tgccttgtaaaacataaaaaaaggagcattttattagagatatcctttcaaaacaaaatatacgtactttcccacccatgttattcctcatctaaacaca |
26363813 |
T |
|
| Q |
640 |
caatggttaagtttatgaatgatgacataagataatttacagtttagttgatagttttgaatctg-gggatcaatgtatg-ttgatagaggatatcttg |
736 |
Q |
| |
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|| |||| ||||||||||||||||| |||| || ||||||| ||||||||||||||||| || | | ||||||||| ||||||||||||| |||| |
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| T |
26363814 |
cagaggttgagtttatgaatgatgacctaaggaaaattacagtcgagttgatagttttgaatttgtagaaccaatgtatgtttgatagaggataacttg |
26363912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 26365771 - 26366064
Alignment:
| Q |
1 |
ttttctatatctaatctactttactataagcatgccattgtcaagttaaactcaaacactccaatgctgcttgcagtaagtaaacttatccgcaactcca |
100 |
Q |
| |
|
|||||||||| |||| | ||| ||||| |||||||||| |||| |||||| ||||||||| ||| |||| || ||||||||||| || |||| ||| |
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| T |
26365771 |
ttttctatattcaatcaaatttcctataggcatgccattttcaaattaaacccaaacactc---tgcagcttccaataagtaaacttgtcaacaac-cca |
26365866 |
T |
|
| Q |
101 |
aaaatagaggtatacaatgcatcactggagtacattgttgtttcacagtccaatgcagtgacttatcaaaaaacaaattatcacacaaccaaataatatc |
200 |
Q |
| |
|
|||| ||||||||||||||||||||| | | |||||||| |||| | ||||| ||| |||||||||| |||||||||| ||||||| |||||| ||| |
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|
| T |
26365867 |
aaaa-agaggtatacaatgcatcact--actgcattgttgattcataatccaaagcatcgacttatcaatgaacaaattattacacaactaaataacatc |
26365963 |
T |
|
| Q |
201 |
attcatatagggaaattagaaatggggtaaatgcgagtaaatatcatatagtgccggcataaaaaattagatatataaagcagcaagaaataaaccagat |
300 |
Q |
| |
|
||||| |||| ||| ||||||||||||||||| |||||| ||||||| ||||| ||||||||||| ||| | ||||||||||||| | |||||||||| |
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| T |
26365964 |
attcaaatagataaaccagaaatggggtaaatgccagtaaagatcatattgtgccagcataaaaaatcagacacataaagcagcaaggactaaaccagat |
26366063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 133 - 298
Target Start/End: Original strand, 26363407 - 26363573
Alignment:
| Q |
133 |
cattgttgtttcacagtccaatgcagtgacttatcaaaaaacaaattatcacacaaccaaataatatcattcatatagggaaattagaaatggggtaaat |
232 |
Q |
| |
|
||||||||||||||| ||||| | ||| |||||||||| |||||||||| ||||||||||||||||||||||| |||| ||| ||||||||||||||| |
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|
| T |
26363407 |
cattgttgtttcacaatccaaagaagttacttatcaaagaacaaattattacacaaccaaataatatcattcaaatagataaaccagaaatggggtaaat |
26363506 |
T |
|
| Q |
233 |
gcgagtaaatatcatatagtgccggcat-aaaaaattagatatataaagcagcaagaaataaaccag |
298 |
Q |
| |
|
|| |||||| ||| |||||||| |||| ||||||| ||| | ||||||||||| ||| |||||||| |
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|
| T |
26363507 |
gccagtaaagatcgcatagtgccagcataaaaaaatcagacacataaagcagcaggaactaaaccag |
26363573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 444 - 703
Target Start/End: Original strand, 26366169 - 26366435
Alignment:
| Q |
444 |
aatctctatgcatgagataattccaccttttttggtgtatttttcaattctttactgtgagtagtaaaatgcctcattaaaatactt--nnnnnnnngtc |
541 |
Q |
| |
|
|||||| ||||||| ||||||||||| ||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||| | | |
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|
| T |
26366169 |
aatctccatgcatgtgataattccactctttttggtggatatttcaattctttattgtgagtagtaaaatgcctcattaaaatacttgaaattttaagac |
26366268 |
T |
|
| Q |
542 |
tgtcttctaaagcatcaaaaaggagcattttattag----atacatcctttcaaa---aagtatatatgtactttccctcccatgttattcctcatctaa |
634 |
Q |
| |
|
| ||| |||| ||| |||||||||||||||||||| || ||||||| ||| || || ||||| ||||||||||||||||||||||||||||| |
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|
| T |
26366269 |
taacttgtaaaacataaaaaaggagcattttattagagatatctatccttttaaaaataaaaatgtatgtgctttccctcccatgttattcctcatctaa |
26366368 |
T |
|
| Q |
635 |
acacacaatggttaagtttatgaatgatgacataagataatttacagtttagttgatagttttgaatct |
703 |
Q |
| |
|
|||||| |||| |||| ||| ||| | || |||| || |||||||| ||||||| ||||||||||| |
|
|
| T |
26366369 |
--acacaacggttgagttgatggatggtaacctaaggaaagttacagttgagttgattgttttgaatct |
26366435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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