View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7109_low_10 (Length: 317)

Name: NF7109_low_10
Description: NF7109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7109_low_10
NF7109_low_10
[»] chr8 (1 HSPs)
chr8 (9-79)||(18293917-18293987)
[»] chr7 (1 HSPs)
chr7 (9-79)||(1432388-1432455)
[»] chr1 (1 HSPs)
chr1 (98-140)||(13037800-13037842)
[»] chr5 (3 HSPs)
chr5 (167-220)||(1084073-1084126)
chr5 (98-134)||(16889671-16889707)
chr5 (167-219)||(37968960-37969012)
[»] chr4 (1 HSPs)
chr4 (98-134)||(25487643-25487679)


Alignment Details
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 18293917 - 18293987
Alignment:
Q  9 tggtgttagaaaatagtaatcagaatggtgaagagaaggttaaacctgttctacaggcattgttcactcat 79  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||| ||||||    
T  18293917 tggtgttagaaaatagtgatcagaatggtgaagagaaggttaaacctgttctacatgcagtgttgactcat 18293987  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 1432455 - 1432388
Alignment:
Q  9 tggtgttagaaaatagtaatcagaatggtgaagagaaggttaaacctgttctacaggcattgttcactcat 79  Q
    |||||||||||| |||| |||||||||   ||||||||||||||||||||||||||||| |||||||||||    
T  1432455 tggtgttagaaactagtgatcagaatg---aagagaaggttaaacctgttctacaggcagtgttcactcat 1432388  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 13037800 - 13037842
Alignment:
Q  98 tgcttatgtataagctatttccattacaaaaaataaagtcaaa 140  Q
    ||||||||||||||||||||| || |||||| |||||||||||    
T  13037800 tgcttatgtataagctatttctataacaaaagataaagtcaaa 13037842  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 1084126 - 1084073
Alignment:
Q  167 ataagctctctcacacagtttcacaagttcttatgtttgtaaataagctcaaat 220  Q
    |||| |||||||| |||||||||||||| |||||||  |||||||| |||||||    
T  1084126 ataaactctctcaaacagtttcacaagtgcttatgtcagtaaataaactcaaat 1084073  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 16889671 - 16889707
Alignment:
Q  98 tgcttatgtataagctatttccattacaaaaaataaa 134  Q
    |||||||||||||||||||||||| |||||| |||||    
T  16889671 tgcttatgtataagctatttccataacaaaagataaa 16889707  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 37968960 - 37969012
Alignment:
Q  167 ataagctctctcacacagtttcacaagttcttatgtttgtaaataagctcaaa 219  Q
    ||||| ||||||| |||||||||||||| |||||||  ||| |||||||||||    
T  37968960 ataagatctctcaaacagtttcacaagtacttatgtcagtagataagctcaaa 37969012  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 25487679 - 25487643
Alignment:
Q  98 tgcttatgtataagctatttccattacaaaaaataaa 134  Q
    ||||||||||||||||||||| || ||||||||||||    
T  25487679 tgcttatgtataagctatttctataacaaaaaataaa 25487643  T

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