View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7109_low_17 (Length: 254)
Name: NF7109_low_17
Description: NF7109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7109_low_17 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 44729650 - 44729886
Alignment:
| Q |
18 |
acttaaaccaacaactttcactaatttgaccatattattgatcaaatctttgcaccaataaaacttgtaaggaataaccaaccagatatctttctcttaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44729650 |
acttaaaccaacaactttcactaatttgaccatattattgatcaaatctttgcaccaataaaacttgtaaggaataaccaaccagatatctttctcttaa |
44729749 |
T |
|
| Q |
118 |
ccttcttttccttaatggtatccaagctaggcttccaccctttccctgataattgcctactcaaattcaaatactctgctctttcctccatcatttctgg |
217 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44729750 |
ccttcttttccttaattgtatccaagctaggcttccaccctttccctgataattgcctactcaaattcaaatactctgctctttcctccatcatttctgg |
44729849 |
T |
|
| Q |
218 |
caaaaactcacaaaaattaaacctcccttcttcattt |
254 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
44729850 |
caaaaactcacaaaaattaaacctctcttcttcattt |
44729886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 39084314 - 39084251
Alignment:
| Q |
120 |
ttcttttccttaatggtatccaagctaggcttccaccctttccctgataattgcctactcaaat |
183 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||| | |||||| |||||| |
|
|
| T |
39084314 |
ttcttctccttaatagtatccaagctaggcttccaccctttccctgaaatctgcctattcaaat |
39084251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University