View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7109_low_2 (Length: 704)

Name: NF7109_low_2
Description: NF7109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7109_low_2
NF7109_low_2
[»] chr1 (14 HSPs)
chr1 (18-371)||(9630675-9631030)
chr1 (442-695)||(9630349-9630603)
chr1 (436-489)||(5944365-5944418)
chr1 (434-482)||(16297223-16297271)
chr1 (198-249)||(7528130-7528181)
chr1 (435-482)||(17778623-17778670)
chr1 (435-485)||(2218298-2218348)
chr1 (454-484)||(46940748-46940778)
chr1 (434-487)||(11412704-11412757)
chr1 (435-484)||(18337399-18337448)
chr1 (454-487)||(47989597-47989630)
chr1 (454-486)||(22515825-22515857)
chr1 (454-486)||(35702540-35702572)
chr1 (434-482)||(42359391-42359439)
[»] chr3 (9 HSPs)
chr3 (540-662)||(41257573-41257695)
chr3 (56-129)||(41256784-41256857)
chr3 (435-482)||(25775577-25775624)
chr3 (434-483)||(1389907-1389956)
chr3 (435-484)||(27505321-27505370)
chr3 (435-484)||(40052382-40052431)
chr3 (434-486)||(34185050-34185102)
chr3 (455-484)||(8903525-8903554)
chr3 (435-484)||(25074865-25074914)
[»] scaffold0050 (1 HSPs)
scaffold0050 (435-481)||(70348-70394)
[»] chr6 (3 HSPs)
chr6 (435-485)||(28152168-28152218)
chr6 (436-484)||(4878014-4878061)
chr6 (452-484)||(8805524-8805556)
[»] chr2 (4 HSPs)
chr2 (434-484)||(10535685-10535735)
chr2 (435-484)||(26769592-26769641)
chr2 (435-484)||(37419824-37419873)
chr2 (434-486)||(15909568-15909620)
[»] chr5 (4 HSPs)
chr5 (435-484)||(2436981-2437030)
chr5 (436-487)||(17123119-17123169)
chr5 (435-484)||(31084398-31084447)
chr5 (435-484)||(32766872-32766921)
[»] chr7 (9 HSPs)
chr7 (454-486)||(32093952-32093984)
chr7 (436-488)||(40287298-40287350)
chr7 (441-484)||(35862027-35862070)
chr7 (434-484)||(1433528-1433578)
chr7 (454-492)||(19213882-19213920)
chr7 (435-484)||(5409771-5409820)
chr7 (435-484)||(29763129-29763178)
chr7 (435-487)||(6490786-6490838)
chr7 (436-484)||(21880223-21880271)
[»] chr4 (13 HSPs)
chr4 (436-484)||(29205539-29205587)
chr4 (435-482)||(22440559-22440606)
chr4 (454-484)||(12895214-12895244)
chr4 (434-484)||(18513175-18513225)
chr4 (435-485)||(23292925-23292975)
chr4 (435-484)||(19482749-19482798)
chr4 (436-484)||(715545-715593)
chr4 (436-484)||(752871-752919)
chr4 (435-483)||(3947702-3947750)
chr4 (456-488)||(12884343-12884375)
chr4 (436-484)||(16184902-16184950)
chr4 (435-483)||(24544040-24544088)
chr4 (452-484)||(28470452-28470484)
[»] scaffold0020 (1 HSPs)
scaffold0020 (435-486)||(135261-135312)
[»] scaffold0380 (1 HSPs)
scaffold0380 (435-484)||(8671-8720)
[»] scaffold0027 (1 HSPs)
scaffold0027 (454-487)||(46746-46779)
[»] chr8 (1 HSPs)
chr8 (435-484)||(36450694-36450743)
[»] scaffold0793 (1 HSPs)
scaffold0793 (436-484)||(4821-4869)
[»] scaffold0003 (1 HSPs)
scaffold0003 (435-495)||(241675-241735)


Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 371
Target Start/End: Complemental strand, 9631030 - 9630675
Alignment:
Q  18 acaacatcgtatgtcgcatatcacggtcgaacgcaatcgaagaaagcaaatgaatgagcagttatcaattttgaagtcacttatgccttgcttttatgtc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9631030 acaacatcgtatgtcgcatatcacggtcgaacgcaatcgaagaaagcaaatgaatgagcagttatcaattttgaagtcacttatgccttgcttttatgtc 9630931  T
Q  118 aaaagagtaagtacatattaactaacttgtcacaaattcaaattctaaataannnnnnn--aaagttttaaattcaattagttaggggtttgcatgattc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||    
T  9630930 aaaagagtaagtacatattaactaacttgtcacaaattcaaattctaaataatttttttttaaagttttaaattcaattagttaggggtttgcatgattc 9630831  T
Q  216 ataaaccaaaccaagtttatggtttagttcagttgttttggtgcaatttggtttggtgcaatttaatcaaaaattttaatttttgattggtcttctatat 315  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9630830 ataaaccaaaccaaatttatggtttagttcagttgttttggtgcaatttggtttggtgcaatttaatcaaaaattttaatttttgattggtcttctatat 9630731  T
Q  316 tagagtgctatagaagcaattatgttttcttcttttaaaatctatgaagcacggat 371  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9630730 tagagtgctatagaagcatttatgttttcttcttttaaaatctatgaagcacggat 9630675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 442 - 695
Target Start/End: Complemental strand, 9630603 - 9630349
Alignment:
Q  442 acacgaggatatgcctaatccgaggagtgttcgtgcttcatagtttaaaattaannnnnnn-gtatgaaaaatgcaactaattactctcctatatggttt 540  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||    
T  9630603 acacgaggacacgcctaatccgaggagtgttcgtgcttcatagtttaaaattaattttttttgtatgaaaaatgcaactaattactctcctatatggttt 9630504  T
Q  541 agggagatcaagcatcaatagttgaaagtgtaattgattacatcaacgagttacatcaactactacaatgcctagaatccaagaaacaaagaaaagttta 640  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9630503 agggagatcaagcatcaatagttgaaagtgtaattgattacatcaacgagttacatcaactactacaatgcctagaatccaagaaacaaagaaaagttta 9630404  T
Q  641 caatgaagtaccaagtccaagacctttaccaccaagtcctagaataatctaccca 695  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9630403 caatgaagtaccaagtccaagacctttaccaccaagtcctagaataatcttccca 9630349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 436 - 489
Target Start/End: Original strand, 5944365 - 5944418
Alignment:
Q  436 tgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatagtttaa 489  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||||||| ||||    
T  5944365 tgtccgacaccgggatacgcctaatccgaggagtgttcgtgcttcatagattaa 5944418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 434 - 482
Target Start/End: Complemental strand, 16297271 - 16297223
Alignment:
Q  434 tgtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcat 482  Q
    |||||||||||| |||| | |||||||||||||||||| ||||||||||    
T  16297271 tgtgtccgacaccaggacacgcctaatccgaggagtgtccgtgcttcat 16297223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 7528130 - 7528181
Alignment:
Q  198 taggggtttgcatgattcataaaccaaaccaagtttatggtttagttcagtt 249  Q
    ||||||| |||||||||||| |||||||||||  | ||||||||||||||||    
T  7528130 taggggtgtgcatgattcatgaaccaaaccaaactgatggtttagttcagtt 7528181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 435 - 482
Target Start/End: Original strand, 17778623 - 17778670
Alignment:
Q  435 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcat 482  Q
    |||||||||||  ||| |||||||||||||| ||||||||||||||||    
T  17778623 gtgtccgacaccgggacatgcctaatccgagaagtgttcgtgcttcat 17778670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 485
Target Start/End: Original strand, 2218298 - 2218348
Alignment:
Q  435 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatagt 485  Q
    ||||||||||| |||| | |||||||| ||||||||| |||||||||||||    
T  2218298 gtgtccgacactaggacacgcctaatctgaggagtgtccgtgcttcatagt 2218348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 454 - 484
Target Start/End: Complemental strand, 46940778 - 46940748
Alignment:
Q  454 gcctaatccgaggagtgttcgtgcttcatag 484  Q
    |||||||||||||||||||||||||||||||    
T  46940778 gcctaatccgaggagtgttcgtgcttcatag 46940748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 434 - 487
Target Start/End: Complemental strand, 11412757 - 11412704
Alignment:
Q  434 tgtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatagttt 487  Q
    |||||||||||| |||| |||||| |||| |||||||| |||||||||| ||||    
T  11412757 tgtgtccgacactaggacatgccttatcctaggagtgtccgtgcttcatggttt 11412704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 435 - 484
Target Start/End: Original strand, 18337399 - 18337448
Alignment:
Q  435 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 484  Q
    |||||||||||  ||| |||||| ||||||||||||| ||||||||||||    
T  18337399 gtgtccgacactgggacatgcctgatccgaggagtgtccgtgcttcatag 18337448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 487
Target Start/End: Original strand, 47989597 - 47989630
Alignment:
Q  454 gcctaatccgaggagtgttcgtgcttcatagttt 487  Q
    |||||||||||||||||| |||||||||||||||    
T  47989597 gcctaatccgaggagtgtccgtgcttcatagttt 47989630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 454 - 486
Target Start/End: Complemental strand, 22515857 - 22515825
Alignment:
Q  454 gcctaatccgaggagtgttcgtgcttcatagtt 486  Q
    |||||||||||||||||| ||||||||||||||    
T  22515857 gcctaatccgaggagtgtccgtgcttcatagtt 22515825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 454 - 486
Target Start/End: Complemental strand, 35702572 - 35702540
Alignment:
Q  454 gcctaatccgaggagtgttcgtgcttcatagtt 486  Q
    |||||||||||||||||| ||||||||||||||    
T  35702572 gcctaatccgaggagtgtccgtgcttcatagtt 35702540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 434 - 482
Target Start/End: Complemental strand, 42359439 - 42359391
Alignment:
Q  434 tgtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcat 482  Q
    ||||||||||||  ||| | |||||||||||||||||| ||||||||||    
T  42359439 tgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 42359391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 540 - 662
Target Start/End: Original strand, 41257573 - 41257695
Alignment:
Q  540 tagggagatcaagcatcaatagttgaaagtgtaattgattacatcaacgagttacatcaactactacaatgcctagaatccaagaaacaaagaaaagttt 639  Q
    ||||||||||||||||||||| ||| | ||||| ||||||||||||  ||||| || |||||||| |||  ||| ||| ||||||||||||||||||| |    
T  41257573 tagggagatcaagcatcaataattggaggtgtagttgattacatcacagagttgcaacaactactccaagcccttgaagccaagaaacaaagaaaagtat 41257672  T
Q  640 acaatgaagtaccaagtccaaga 662  Q
    ||| |||||||| ||||||||||    
T  41257673 acagtgaagtactaagtccaaga 41257695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 41256784 - 41256857
Alignment:
Q  56 gaagaaagcaaatgaatgagcagttatcaattttgaagtcacttatgccttgcttttatgtcaaaagagtaagt 129  Q
    |||||||||||||||||||||| || ||  |||| | |||||||||||||||||||||||||||||| ||||||    
T  41256784 gaagaaagcaaatgaatgagcatttgtctgttttaaggtcacttatgccttgcttttatgtcaaaagggtaagt 41256857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 435 - 482
Target Start/End: Original strand, 25775577 - 25775624
Alignment:
Q  435 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcat 482  Q
    ||||||||||| |||| | |||||||||||||||||||||||||||||    
T  25775577 gtgtccgacaccaggacacgcctaatccgaggagtgttcgtgcttcat 25775624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 434 - 483
Target Start/End: Original strand, 1389907 - 1389956
Alignment:
Q  434 tgtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcata 483  Q
    |||||||||||| |||| ||||||||||| |||||||| |||||||||||    
T  1389907 tgtgtccgacaccaggacatgcctaatccaaggagtgtccgtgcttcata 1389956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 435 - 484
Target Start/End: Original strand, 27505321 - 27505370
Alignment:
Q  435 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 484  Q
    |||||||||||  ||| |||||||||||||||||||| ||||||||||||    
T  27505321 gtgtccgacaccgggacatgcctaatccgaggagtgtccgtgcttcatag 27505370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 435 - 484
Target Start/End: Original strand, 40052382 - 40052431
Alignment:
Q  435 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 484  Q
    |||||||||||  ||| | |||||||||||||||||||||||||||||||    
T  40052382 gtgtccgacaccgggacacgcctaatccgaggagtgttcgtgcttcatag 40052431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 434 - 486
Target Start/End: Complemental strand, 34185102 - 34185050
Alignment:
Q  434 tgtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatagtt 486  Q
    ||||||||||||  ||| | |||||||||||||||||| ||||||||||||||    
T  34185102 tgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagtt 34185050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 455 - 484
Target Start/End: Original strand, 8903525 - 8903554
Alignment:
Q  455 cctaatccgaggagtgttcgtgcttcatag 484  Q
    ||||||||||||||||||||||||||||||    
T  8903525 cctaatccgaggagtgttcgtgcttcatag 8903554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 435 - 484
Target Start/End: Original strand, 25074865 - 25074914
Alignment:
Q  435 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 484  Q
    |||||||||||  ||| |  ||||||||||||||||||||||||||||||    
T  25074865 gtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcatag 25074914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 435 - 481
Target Start/End: Original strand, 70348 - 70394
Alignment:
Q  435 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttca 481  Q
    ||||||||||| |||| ||||||||||||| ||||||||||||||||    
T  70348 gtgtccgacaccaggacatgcctaatccgatgagtgttcgtgcttca 70394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 435 - 485
Target Start/End: Original strand, 28152168 - 28152218
Alignment:
Q  435 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatagt 485  Q
    |||||||||||  ||| | ||||||||||||||||||||||||||||||||    
T  28152168 gtgtccgacaccgggacaggcctaatccgaggagtgttcgtgcttcatagt 28152218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 436 - 484
Target Start/End: Original strand, 4878014 - 4878061
Alignment:
Q  436 tgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 484  Q
    |||||||||| |||| | |||||||||||||||||| ||||||||||||    
T  4878014 tgtccgacac-aggacacgcctaatccgaggagtgtccgtgcttcatag 4878061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 452 - 484
Target Start/End: Complemental strand, 8805556 - 8805524
Alignment:
Q  452 atgcctaatccgaggagtgttcgtgcttcatag 484  Q
    |||||||||||||||||||| ||||||||||||    
T  8805556 atgcctaatccgaggagtgtccgtgcttcatag 8805524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 434 - 484
Target Start/End: Complemental strand, 10535735 - 10535685
Alignment:
Q  434 tgtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 484  Q
    |||||| ||||| |||| | |||||||||||||||||||||||||||||||    
T  10535735 tgtgtctgacaccaggacacgcctaatccgaggagtgttcgtgcttcatag 10535685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 435 - 484
Target Start/End: Original strand, 26769592 - 26769641
Alignment:
Q  435 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 484  Q
    |||||||||||  ||| | |||||||||||||||||| ||||||||||||    
T  26769592 gtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcatag 26769641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 435 - 484
Target Start/End: Original strand, 37419824 - 37419873
Alignment:
Q  435 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 484  Q
    |||||||||||  ||| | |||||||||||||||||| ||||||||||||    
T  37419824 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 37419873  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 434 - 486
Target Start/End: Complemental strand, 15909620 - 15909568
Alignment:
Q  434 tgtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatagtt 486  Q
    ||||||||||||  ||| | ||||||| ||| |||||||||||||||||||||    
T  15909620 tgtgtccgacacagggacacgcctaattcgaagagtgttcgtgcttcatagtt 15909568  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 435 - 484
Target Start/End: Original strand, 2436981 - 2437030
Alignment:
Q  435 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 484  Q
    ||||||||||| | || | |||||||||||||||||||||||||||||||    
T  2436981 gtgtccgacaccaagacacgcctaatccgaggagtgttcgtgcttcatag 2437030  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 436 - 487
Target Start/End: Original strand, 17123119 - 17123169
Alignment:
Q  436 tgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatagttt 487  Q
    ||||||||||| ||| | |||||||||||||||||| |||||||||||||||    
T  17123119 tgtccgacacg-ggacacgcctaatccgaggagtgtccgtgcttcatagttt 17123169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 435 - 484
Target Start/End: Original strand, 31084398 - 31084447
Alignment:
Q  435 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 484  Q
    |||||||||||  ||| |||||||||||||||||||| |||| |||||||    
T  31084398 gtgtccgacactgggacatgcctaatccgaggagtgtccgtggttcatag 31084447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 435 - 484
Target Start/End: Complemental strand, 32766921 - 32766872
Alignment:
Q  435 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 484  Q
    ||||||||||| |||||| | |||||| ||||||||| ||||||||||||    
T  32766921 gtgtccgacaccaggatacgtctaatctgaggagtgtccgtgcttcatag 32766872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 454 - 486
Target Start/End: Complemental strand, 32093984 - 32093952
Alignment:
Q  454 gcctaatccgaggagtgttcgtgcttcatagtt 486  Q
    |||||||||||||||||||||||||||||||||    
T  32093984 gcctaatccgaggagtgttcgtgcttcatagtt 32093952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 488
Target Start/End: Complemental strand, 40287350 - 40287298
Alignment:
Q  436 tgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatagttta 488  Q
    ||||||||||  ||| |||||||||||||||||||| |||||||| |||||||    
T  40287350 tgtccgacaccgggacatgcctaatccgaggagtgtccgtgcttcgtagttta 40287298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 441 - 484
Target Start/End: Original strand, 35862027 - 35862070
Alignment:
Q  441 gacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 484  Q
    |||||||||| | |||||||||||||||||| ||||||||||||    
T  35862027 gacacgaggacacgcctaatccgaggagtgtccgtgcttcatag 35862070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 484
Target Start/End: Original strand, 1433528 - 1433578
Alignment:
Q  434 tgtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 484  Q
    |||||||||||| |||| | | |||||||||||||||| ||||||||||||    
T  1433528 tgtgtccgacaccaggacacgtctaatccgaggagtgtccgtgcttcatag 1433578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 19213882 - 19213920
Alignment:
Q  454 gcctaatccgaggagtgttcgtgcttcatagtttaaaat 492  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  19213882 gcctaatccgaggagtgtccgtgcttcatagttcaaaat 19213920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 435 - 484
Target Start/End: Complemental strand, 5409820 - 5409771
Alignment:
Q  435 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 484  Q
    |||||||||||  ||| | |||||||||||||||||| ||||||||||||    
T  5409820 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 5409771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 435 - 484
Target Start/End: Complemental strand, 29763178 - 29763129
Alignment:
Q  435 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 484  Q
    ||||||||||  |||| | |||||||||||||||||| ||||||||||||    
T  29763178 gtgtccgacatcaggacacgcctaatccgaggagtgtccgtgcttcatag 29763129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 435 - 487
Target Start/End: Original strand, 6490786 - 6490838
Alignment:
Q  435 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatagttt 487  Q
    |||||||||||  ||| | || ||||||||||||||| |||||||||||||||    
T  6490786 gtgtccgacaccgggacacgcttaatccgaggagtgtccgtgcttcatagttt 6490838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 436 - 484
Target Start/End: Original strand, 21880223 - 21880271
Alignment:
Q  436 tgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 484  Q
    |||||||||| |||| | |||||||||||| ||||| ||||||||||||    
T  21880223 tgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttcatag 21880271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 484
Target Start/End: Original strand, 29205539 - 29205587
Alignment:
Q  436 tgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 484  Q
    ||||||||||  ||| | |||||||||||||||||||||||||||||||    
T  29205539 tgtccgacactgggacacgcctaatccgaggagtgttcgtgcttcatag 29205587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 435 - 482
Target Start/End: Complemental strand, 22440606 - 22440559
Alignment:
Q  435 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcat 482  Q
    ||||||||||| |||| | |||||||||||||||||| ||||||||||    
T  22440606 gtgtccgacactaggacacgcctaatccgaggagtgtccgtgcttcat 22440559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 454 - 484
Target Start/End: Complemental strand, 12895244 - 12895214
Alignment:
Q  454 gcctaatccgaggagtgttcgtgcttcatag 484  Q
    |||||||||||||||||||||||||||||||    
T  12895244 gcctaatccgaggagtgttcgtgcttcatag 12895214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 484
Target Start/End: Complemental strand, 18513225 - 18513175
Alignment:
Q  434 tgtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 484  Q
    |||||||||||| |||| | |||||||| ||||||||| ||||||||||||    
T  18513225 tgtgtccgacaccaggacacgcctaatctgaggagtgtccgtgcttcatag 18513175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 485
Target Start/End: Complemental strand, 23292975 - 23292925
Alignment:
Q  435 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatagt 485  Q
    |||||||||||  ||| | |||||||||||||||||| |||||||||||||    
T  23292975 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagt 23292925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 435 - 484
Target Start/End: Original strand, 19482749 - 19482798
Alignment:
Q  435 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 484  Q
    |||||||||||  ||| |  ||||||||||||||||||||||||||||||    
T  19482749 gtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcatag 19482798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 436 - 484
Target Start/End: Complemental strand, 715593 - 715545
Alignment:
Q  436 tgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 484  Q
    ||||||||||  ||| | |||||||||||||||||| ||||||||||||    
T  715593 tgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 715545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 436 - 484
Target Start/End: Complemental strand, 752919 - 752871
Alignment:
Q  436 tgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 484  Q
    ||||||||||  ||| | |||||||||||||||||| ||||||||||||    
T  752919 tgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 752871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 435 - 483
Target Start/End: Complemental strand, 3947750 - 3947702
Alignment:
Q  435 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcata 483  Q
    ||||||||||| |||| |  ||||||||||||||||| |||||||||||    
T  3947750 gtgtccgacaccaggacacacctaatccgaggagtgtccgtgcttcata 3947702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 456 - 488
Target Start/End: Complemental strand, 12884375 - 12884343
Alignment:
Q  456 ctaatccgaggagtgttcgtgcttcatagttta 488  Q
    |||||||||||||||| ||||||||||||||||    
T  12884375 ctaatccgaggagtgtccgtgcttcatagttta 12884343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 436 - 484
Target Start/End: Original strand, 16184902 - 16184950
Alignment:
Q  436 tgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 484  Q
    ||||||||||  ||| | ||||||||||||||||||| |||||||||||    
T  16184902 tgtccgacactgggacacgcctaatccgaggagtgtttgtgcttcatag 16184950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 435 - 483
Target Start/End: Original strand, 24544040 - 24544088
Alignment:
Q  435 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcata 483  Q
    |||||||||||  ||| ||||||||||||||||||| || |||||||||    
T  24544040 gtgtccgacacatggacatgcctaatccgaggagtgctcatgcttcata 24544088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 452 - 484
Target Start/End: Original strand, 28470452 - 28470484
Alignment:
Q  452 atgcctaatccgaggagtgttcgtgcttcatag 484  Q
    |||||||||||||||||||| ||||||||||||    
T  28470452 atgcctaatccgaggagtgtccgtgcttcatag 28470484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 435 - 486
Target Start/End: Complemental strand, 135312 - 135261
Alignment:
Q  435 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatagtt 486  Q
    ||||||||||| |||| | |||||||| |||| |||||||||||||||||||    
T  135312 gtgtccgacaccaggacacgcctaatctgaggcgtgttcgtgcttcatagtt 135261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 435 - 484
Target Start/End: Original strand, 8671 - 8720
Alignment:
Q  435 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 484  Q
    |||||||||||  ||||| ||||||||| |||||||| ||||||||||||    
T  8671 gtgtccgacactgggatacgcctaatccaaggagtgtccgtgcttcatag 8720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 487
Target Start/End: Original strand, 46746 - 46779
Alignment:
Q  454 gcctaatccgaggagtgttcgtgcttcatagttt 487  Q
    |||||||||||||||||| |||||||||||||||    
T  46746 gcctaatccgaggagtgtccgtgcttcatagttt 46779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 435 - 484
Target Start/End: Complemental strand, 36450743 - 36450694
Alignment:
Q  435 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 484  Q
    ||||||||||| |||| | ||||||||||||||||||  |||||||||||    
T  36450743 gtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcatag 36450694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 436 - 484
Target Start/End: Complemental strand, 4869 - 4821
Alignment:
Q  436 tgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 484  Q
    ||||||||||  ||| | |||||||||||||||||| ||||||||||||    
T  4869 tgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 4821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 435 - 495
Target Start/End: Original strand, 241675 - 241735
Alignment:
Q  435 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatagtttaaaattaa 495  Q
    |||||||||||  ||| | |||||||||||| ||||| |||||||||||| ||| ||||||    
T  241675 gtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatagattacaattaa 241735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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