View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7109_low_4 (Length: 566)
Name: NF7109_low_4
Description: NF7109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7109_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 30 - 550
Target Start/End: Original strand, 18064921 - 18065447
Alignment:
| Q |
30 |
tctatttagtaatgtaattttatccgtttcccgccaaaatatttccagcagcttctattttccctccttacaaacctgacctcagttctcttcccttctc |
129 |
Q |
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| T |
18064921 |
tctatttagtaatgtaattttatccgtttcccgccaaaatatttccagcagcttctattttccctccttacaaacctgacctcacttctcttcccttttc |
18065020 |
T |
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| Q |
130 |
acatcaaacaaacacattcaaactttaccatctcactcaaacccatccttcaatcctctacaatggatgatttcgatgtcatggatatgg------acat |
223 |
Q |
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| T |
18065021 |
acatcaaacaaacacattcaaactctaccatctcactcaaacccatccttcaatcctctacaatggatgatttcgatgtcatggacatggacatggacat |
18065120 |
T |
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| Q |
224 |
ggacatggaaatggacgttcctctccccgaagaactcgaattactcgaatcaacctatcgcacttacgaacaacaacccgatgatgatgaccactacttt |
323 |
Q |
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| T |
18065121 |
ggacatggaaatggacgttcctctccccgaagaactcgaattactcgaatcaacctatcgcacttacgaacaacaacccgatgatgatgaccactacttt |
18065220 |
T |
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| Q |
324 |
tacaatcctcccgaagacgaacccgaacccgacccagaacaacaatcaccgccaacagatctcgttaacagccacaagcgttctcgttcgaattcagatt |
423 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18065221 |
tacaatcctcccgaagacgaacccgaacccgaaccagaacaacaatcatcgccaacagatctcgttaacagccacaagcgttctcgttcgaattcagatt |
18065320 |
T |
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| Q |
424 |
cggatttggatttggattcttctgatgttgaaaagagagagaaagttagggttagggttgcggaagatgctcctgcagaagaagaggattggcttcggcc |
523 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18065321 |
cggatttggatttggattcttctgatgttgaaaagagtgagaaagttagggttagggttgcggaagatgctcctgcagaagaagaggattggcttcggcc |
18065420 |
T |
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| Q |
524 |
acctccgacttcggatacagttgaaga |
550 |
Q |
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| T |
18065421 |
acctccgacttcggatacagtcgaaga |
18065447 |
T |
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