View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7109_low_5 (Length: 549)
Name: NF7109_low_5
Description: NF7109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7109_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 19 - 459
Target Start/End: Complemental strand, 43710411 - 43709975
Alignment:
| Q |
19 |
cacgtggaatcggagacaacactcgtaaatccaccaccgacttaataacgttcctcgtaagaaagaaaagaaaaagattcttcttcgatcgtcgtaagca |
118 |
Q |
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| T |
43710411 |
cacgtggaatctgagacaacactcgtaaatccaccaccgacttaataacgttcctcgtaagaaagaaaagaaaaagattcttcttcgatcgtcgtaagca |
43710312 |
T |
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| Q |
119 |
aagaattgtgtttatcgttttcttcgttggtttcgattcgcttcgtctgtccctaatttcacagnnnnnnncaaatattcgaatttcagtatattctgaa |
218 |
Q |
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| T |
43710311 |
aagaattgtgtttatcgttttcttcgttggtttcgatttgcttcgtctgtccctaatttcacagaaaaaaacaaatattcgaatttcagtatattctgaa |
43710212 |
T |
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| Q |
219 |
ttttcacattttcgtaatttgaaagaaagaaagaaagaataacccaaaatttgatcgattgagagagaatatgcaacgtcttgctgataatgtcatcgct |
318 |
Q |
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| T |
43710211 |
ttttcacattttcgtaatttgaaagaaagaaagaa----taacccaaaatttgatcgatcgagagagaatatgcaacgtcttgctgataatgtcatcgct |
43710116 |
T |
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| Q |
319 |
gttactaaagagtaagcacatttctatgcttccaaattcatttcttgcatgtgtacatttattatgtagttctattgaatttatgtcannnnnnnctttc |
418 |
Q |
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| T |
43710115 |
gttactaaagagtaagcacatttctctgcttccaaattcatttcttgcatgtgtacatttattatgtagttctattgaatttatgtcatttttttctttc |
43710016 |
T |
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| Q |
419 |
atttctaggaatttacttcggttattttctgcatgccacaa |
459 |
Q |
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| T |
43710015 |
atttctaggaatttacttcggttattttctgcatgccacaa |
43709975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 470 - 531
Target Start/End: Complemental strand, 43709951 - 43709890
Alignment:
| Q |
470 |
aattgccaaccaatttaaacactatttagtgcgtatttggtatcatggtggctcatcgtgat |
531 |
Q |
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| T |
43709951 |
aatttccaaccaatttaaacactatttagtgcgtatttggtatcatggtggctcatcgtgat |
43709890 |
T |
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