View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7109_low_6 (Length: 499)
Name: NF7109_low_6
Description: NF7109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7109_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 12 - 480
Target Start/End: Complemental strand, 36433176 - 36432720
Alignment:
| Q |
12 |
tggacatcaatttttcttatcggcaacatgatgttttatttaaacacacaaaaacgacaccgtgtatacaatacaacctgcgtaagtattgatattggct |
111 |
Q |
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| T |
36433176 |
tggacaccaatttttcttatcggcaacatgatgctttatttaaacacacaaaaacgacacagtgtatacaatacaacctgcataagtattgatattggct |
36433077 |
T |
|
| Q |
112 |
caaggagagagataaaatgaatgattttaaaaaacaaaattgtatctttatacgggtgtctgtttctggaaaatatttcttatattaatatattcgtcat |
211 |
Q |
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| T |
36433076 |
cgaggagagagataaaatgaatgattttaaaaaacaaaattgtatctttatacaggtgtctgtttctggaaaatgtttcttatattaatatattcgtcat |
36432977 |
T |
|
| Q |
212 |
gattcctaagccgatgtttagtttggctttcaaccacttctactcgctttcgcttttgaggcaccatgttaaaatagaagctgtagtagtggcttcagga |
311 |
Q |
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| T |
36432976 |
gattcctaagccgatgtttagtttggctttcaaccacttctactcgctttcgcttttgaggcaccgtgttaaaatagaagctgtagtagtggcttcagga |
36432877 |
T |
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| Q |
312 |
cagaagcacgtctgctgccaatttgcagcaaaataacaaacatccaccatcaacaaaaccatatataaagaca-aaaatttcgagcaaatatctaaaagc |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
36432876 |
cagaagcacgtctgctgccaatttgcagcaaaataacaaacatccaccatcaacaaaaccatatataaagacaaaaaatttctagcaaatatctaaaagc |
36432777 |
T |
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| Q |
411 |
aaaagctactttgccctttgccctttgcccagttccagttccaatggtataggactagttattccttttt |
480 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36432776 |
aaaagctactttgcactttgc-------------ccagttccaatggtataggactagttattccttttt |
36432720 |
T |
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