View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7110_high_4 (Length: 329)
Name: NF7110_high_4
Description: NF7110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7110_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 39562127 - 39561824
Alignment:
| Q |
1 |
ataaaccaataccatatcagactaacaagagccaaattggaaaatccagcctttcgagattctaaaggttttctttaataagatataatcttcaacacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39562127 |
ataaaccaataccatatcagactaacaagagccaaattggaaaatccagcctttcgagattctaaaggttttctttaataagatataatcttcaacacaa |
39562028 |
T |
|
| Q |
101 |
tctcacgtgcatggtttaagattaagatggtattaatatattcacaaaaagcacaactgagatattggatcaattttatactatacactatgttagtgct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39562027 |
tctcacgtgcatggtttaagattaagatggtattaatatattcacaaaaggcacaactgagatattggatcaattttatactatacactatgttagtgct |
39561928 |
T |
|
| Q |
201 |
caaggataatggataagagcagcttcctggaaagcatttccaatttaccttttccacactatataatgcatcacatacaacaactcaaactcaaaccaac |
300 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39561927 |
caagg-------ataagagcagcttcctggaaagcatttccaatttaccttttccacactatataatgcatcacatacaacaactcaaactcaaaccaac |
39561835 |
T |
|
| Q |
301 |
acattaaaaat |
311 |
Q |
| |
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||||||||||| |
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| T |
39561834 |
acattaaaaat |
39561824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 39566806 - 39566511
Alignment:
| Q |
1 |
ataaaccaataccatatcagactaacaagagccaaattggaaaatccagcctttcgagattctaaaggttttctttaataagatataatcttcaacacaa |
100 |
Q |
| |
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|||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39566806 |
ataacccaataccatatcagaataacaagagccaaattggaaaatctagcctttcgagattctaaaggttttctttaataagatataatcttctacacaa |
39566707 |
T |
|
| Q |
101 |
tctcacgtgcatggtttaagattaagatggtattaatatattcacaaaaagcacaactgagatattggatcaattttatactatacactatgttagtgct |
200 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
39566706 |
tctcatgtgcatagtttaagattaagatggtattaatatattcacaaagagcacaacttagatattggatcaattttatataatacactatgttagtgct |
39566607 |
T |
|
| Q |
201 |
caaggataatggataagagcagcttcctggaaagcatttccaatttaccttttccacactatataatgcatcacataca--acaactcaaactcaaacca |
298 |
Q |
| |
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||| | |||||||||||||||||||||||||||||| ||||| |||| ||||||||||||| ||||| ||||| ||||||||||||||||| | |
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| T |
39566606 |
caa-------gaataagagcagcttcctggaaagcatttccagtttactttttgcacactatataatacatcatatacaacacaactcaaactcaaacaa |
39566514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 39572317 - 39572030
Alignment:
| Q |
1 |
ataaaccaataccatatcagactaacaagagccaaattggaaaatccagcctttcgagattctaaa-------ggttttctttaataagatataatcttc |
93 |
Q |
| |
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|||| ||||||||| ||||||||||||| || ||||||||||||| |||||||| |||||||||| |||||||| ||||||||||||| ||| |
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| T |
39572317 |
ataacccaataccaaatcagactaacaataggaaaattggaaaatctagcctttcaagattctaaactctaaaggttttctacaataagatataatattc |
39572218 |
T |
|
| Q |
94 |
aacacaatctcacgtgcatggtttaagattaagatggtattaatatattcacaaaaagcacaactgagatattggatcaattttatactatacactatgt |
193 |
Q |
| |
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|||||||||||| ||||||| | |||||||||| ||||| |||||||||| ||||| | |||||||||||| |||| ||||||||| | |
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| T |
39572217 |
aacacaatctcatgtgcatgatataagattaagttggtagtaatatattcgcaaaatgaacaactgagatactggacaaattttata------------t |
39572130 |
T |
|
| Q |
194 |
tagtgctcaaggataatggataagagcagcttcctggaaagcatttccaatttaccttttccacactatataatgcatcacatacaacaactcaaactca |
293 |
Q |
| |
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||||| |||||||||| ||||||||||||| |||||||||||||||||| ||||| |||||||||||| |||||| |||||||| ||||||||| |
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| T |
39572129 |
tagtgttcaaggataa-------gagcagcttcctgtaaagcatttccaatttactttttcaacactatataatacatcacctacaacaattcaaactca |
39572037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 69 - 267
Target Start/End: Complemental strand, 39560749 - 39560558
Alignment:
| Q |
69 |
ttttctttaataagatataatcttcaacacaatctcacgtgcatggtttaagattaagatggtattaatatattcacaaaaagcacaactgagatattgg |
168 |
Q |
| |
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||||||||||||| ||||||||||||||| ||||| | ||||||| || |||| |||| |||||||||||||||||||||| |||||||||||||| ||| |
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| T |
39560749 |
ttttctttaataatatataatcttcaacataatctgatgtgcatgattcaagaataagttggtattaatatattcacaaaaggcacaactgagatactgg |
39560650 |
T |
|
| Q |
169 |
atcaattttatactatacactatgttagtgctcaaggataatggataagagcagcttcctggaaagcatttccaatttaccttttccacactatataat |
267 |
Q |
| |
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||||||||||||| ||| |||||||||||| |||| ||||||| || |||| |||||||||||||| |||||| |||||||||||| ||||| |
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| T |
39560649 |
atcaattttatacaatatactatgttagtgttcaa-------agataagatcaacttcatggaaagcatttcctatttactttttccacactacataat |
39560558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 26 - 164
Target Start/End: Original strand, 39584617 - 39584755
Alignment:
| Q |
26 |
caagagccaaattggaaaatccagcctttcgagattctaaaggttttctttaataagatataatcttcaacacaatctcacgtgcatggtttaagattaa |
125 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||| ||||||||||||| ||| |||||||||| |||||||||| | | ||||| ||||||||||| |
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| T |
39584617 |
caagagccaaattagaaaatctagcctttcgagatttacaaggttttctttagtaaaatataatcttgaacacaatctaatgcgcatgatttaagattaa |
39584716 |
T |
|
| Q |
126 |
gatggtattaatatattcacaaaaagcacaactgagata |
164 |
Q |
| |
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| |||| | |||||||||||||| |||||||||||||| |
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| T |
39584717 |
gttggtgtccatatattcacaaaaggcacaactgagata |
39584755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 177
Target Start/End: Original strand, 39580986 - 39581146
Alignment:
| Q |
26 |
caagagccaaattggaaaatccagcctttcgagattctaaaggttttctttaataag--atataatcttcaacacaatctc-------acgtgcatggtt |
116 |
Q |
| |
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||||||| |||||| |||||| ||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||| | ||||||| || |
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| T |
39580986 |
caagagcaaaattgtaaaatctagcctttcgagattctaaactttttctttaataaggtatatgatcttcaacacaatctcatgtgcaatgtgcatgatt |
39581085 |
T |
|
| Q |
117 |
taagattaagatggtattaatatattcacaaaaagcacaactgagatattggatcaatttt |
177 |
Q |
| |
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|| |||||| |||||||||||||| |||||||||||||||||||||| | |||||||||| |
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|
| T |
39581086 |
caatattaagttggtattaatatatgcacaaaaagcacaactgagatactagatcaatttt |
39581146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 156
Target Start/End: Original strand, 39574473 - 39574603
Alignment:
| Q |
25 |
acaagagccaaattggaaaatccagcctttcgagattctaaaggttttctttaataagat-ataatcttcaacacaatctcacgtgcatggtttaagatt |
123 |
Q |
| |
|
|||||| || |||||||||||||| |||||| |||||| || |||||||||||||| ||| | |||||| | ||||||| | ||||||| ||||||||| |
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| T |
39574473 |
acaagatccgaattggaaaatccaccctttctagattccaa-ggttttctttaatatgattaaaatctttagaacaatctgatgtgcatg-tttaagatt |
39574570 |
T |
|
| Q |
124 |
aagatggtattaatatattcacaaaaagcacaa |
156 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||| |
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| T |
39574571 |
aatttggtattaaaatattcacaaaaagcacaa |
39574603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 228 - 296
Target Start/End: Original strand, 39581181 - 39581249
Alignment:
| Q |
228 |
tggaaagcatttccaatttaccttttccacactatataatgcatcacatacaacaactcaaactcaaac |
296 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||||||||| |
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|
| T |
39581181 |
tggaaagcatttccacattactttttccacactatataatgcatcgcatacaacaacttaaactcaaac |
39581249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 296
Target Start/End: Original strand, 39584828 - 39584896
Alignment:
| Q |
229 |
ggaaagcatttccaatttaccttt-tccacactatataatgcatcacatacaacaactcaaactcaaac |
296 |
Q |
| |
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|||||||||||||||||||| ||| || || ||||||||| |||||| ||||||||||||||||||| |
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| T |
39584828 |
ggaaagcatttccaatttacttttctcaactctatataatacatcactagcaacaactcaaactcaaac |
39584896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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