View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7110_low_2 (Length: 410)
Name: NF7110_low_2
Description: NF7110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7110_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 20 - 392
Target Start/End: Complemental strand, 43476086 - 43475715
Alignment:
| Q |
20 |
agcagaacacgcagggattatcggcattatctgctaagacaccccttgctttcagagcacccttcgtcatgattctgtcctgcaatactcttccatctaa |
119 |
Q |
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| T |
43476086 |
agcagaacacgcagggattatcgacattatatgcttagacaccccttgctttcagagcacccatcgtcatgattatgtcctgcaatactcttccatctaa |
43475987 |
T |
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| Q |
120 |
aaaccgtgaatttcaatggaaccaaatcgctccacaaaaactttgaaagctctcaacaattctgcagaaacagaattatgctcacagtatctctgcaaca |
219 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43475986 |
aaaccgtgaatttcaatggaaccaaaccgctccacagaaactttgaaagccctcaacaattctgcagaaacagaattatgctcacagtatctctgcaaca |
43475887 |
T |
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| Q |
220 |
gtatatatgcagactttaccgtgtacccaaccatagaatcgtgtctccaaagtccaaacccatttgttcgaaaaatctgcactctacaataaaaacctct |
319 |
Q |
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| T |
43475886 |
gtatatatgcagactttaccgtgtacccaaccatagaatcgtgtctccaaagtccaaacccatttgtccgaaaaatctgcactctacaataaaaacctct |
43475787 |
T |
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| Q |
320 |
agctcaagaaattgatccctctcccatgagaacaaaggtcatctccattctcagctccactccaatctgccac |
392 |
Q |
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||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||| |||| |
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| T |
43475786 |
agctcaagaaattgatccctc-cccatgagaacaaaggccatctccattctcagctccactcccatctcccac |
43475715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 20 - 392
Target Start/End: Original strand, 43564207 - 43564583
Alignment:
| Q |
20 |
agcagaacacgcagggattatcggcattatctgctaagacaccccttgctttcagagcacccttcgtcatgattctgtcctgcaatactcttccatctaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43564207 |
agcagaacacgcagggattatcggcattatctgctaagacaccccttgctttcagagcacccttcgtcatgattctgtcctgcaatactcttccatctaa |
43564306 |
T |
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| Q |
120 |
aaaccgtgaatttcaatggaaccaaatcgctccacaaaaactttgaaagctctcaacaattctgcagaaacagaattatgctcacagtatctctgcaaca |
219 |
Q |
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||||||||||||| |||||||||||| ||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43564307 |
aaaccgtgaatttaaatggaaccaaactgctccacaaaaaccttgaaagcccttaacaattctgcagaaacagaattatgctcacagtatctctgcaaca |
43564406 |
T |
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| Q |
220 |
gtatatatgcagactttaccgtgtacccaaccatagaatcgtgtctccaaagtccaaacccatttgttcgaaaaatctgcact-----------ctacaa |
308 |
Q |
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||||||||||||||||||||||||||||| ||| || || |||| || |||||||||||| ||||||||||||||| || ||| |
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| T |
43564407 |
gtatatatgcagactttaccgtgtacccagccacggagtcatgtc-------tctaaacccatttgtccgaaaaatctgcactcacagtgatccctgcaa |
43564499 |
T |
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| Q |
309 |
taaaaacctctagctcaagaaattgatccctctcccatgagaacaaaggtcatctccattctcagctccactccaatctgccac |
392 |
Q |
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||| | ||||||| ||||| ||||||||||||||||| || |||||||| |||||| | ||||||||||||||||||||||||| |
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| T |
43564500 |
taacagcctctagttcaagcaattgatccctctcccacgataacaaaggccatctctagtctcagctccactccaatctgccac |
43564583 |
T |
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