View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7110_low_3 (Length: 365)
Name: NF7110_low_3
Description: NF7110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7110_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 18785447 - 18785655
Alignment:
| Q |
20 |
aggagagttgacaatattgctaaggagaatagaaaatgcaatatacctcaaacatactacacgagccgatgcatggcatacacgagaatatacgaaacat |
119 |
Q |
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| T |
18785447 |
aggagagttgacaatattgctaaggagaatagaaaatgcaatatacctcaaacatactacacgagccaatgcatggcatacacgagaatatacgaaacat |
18785546 |
T |
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| Q |
120 |
gatgcatgacttatagtagcatatgttgaatgtgacagtatgatgatcataatagaaattatatttaaatttgtggttaag-aaatactattttttcctt |
218 |
Q |
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| T |
18785547 |
gatgcatgacttatagtagcatatgttgaatgtgacagtatgatgatcataataaaaattatatttaaatttgtggttaagaaaatactattttttcctt |
18785646 |
T |
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| Q |
219 |
gaaatatat |
227 |
Q |
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||||||||| |
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| T |
18785647 |
gaaatatat |
18785655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 222 - 338
Target Start/End: Original strand, 18785714 - 18785834
Alignment:
| Q |
222 |
atatatttgaagttcaata----gtatagtaaatgagagaggatttgagcattcaacgaatgatgacttatgttgatcaaatacaattgaggaatatata |
317 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
18785714 |
atatatttgaagttcaataaatagtatagtaaatgagagaggatttgagcattcaacgaatgatgacttgtgttgatcaaatacaatttaggaatatata |
18785813 |
T |
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| Q |
318 |
tgtacaaagtcattgtcaata |
338 |
Q |
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| T |
18785814 |
tgtacaaagtcattgtcaata |
18785834 |
T |
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