View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7111_high_2 (Length: 228)
Name: NF7111_high_2
Description: NF7111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7111_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 60 - 217
Target Start/End: Complemental strand, 38051339 - 38051179
Alignment:
| Q |
60 |
ataagattatctgttacattttttagtgggtgttagnnnnnnncaattagaatatctaaactatttttaggaaaatgggtacaaaacttacttttgaaat |
159 |
Q |
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| T |
38051339 |
ataagattatctgttacattttttagtgggtgttagtttttttcaattagaatatctaaactatttttaagaaaatgggtacaaaacttacttttgaaat |
38051240 |
T |
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| Q |
160 |
aaaaaatcaattgattttattattttgctctatagaaacaaa---tttagatgaatgtgat |
217 |
Q |
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| T |
38051239 |
aaaaaatcaattgattttattattttgctctatagaaacaaatattttagatgaatgtgat |
38051179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 38056081 - 38056018
Alignment:
| Q |
152 |
tttgaaataaaaaa-tcaattgattttattattttgctctatagaaacaaatttagatgaatgt |
214 |
Q |
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| T |
38056081 |
tttgaaataaaaaaatcaattgattttgttattttgttcaataaaaacaaatttagatgaatgt |
38056018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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