View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7111_low_2 (Length: 392)

Name: NF7111_low_2
Description: NF7111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7111_low_2
NF7111_low_2
[»] chr6 (2 HSPs)
chr6 (1-311)||(9984574-9984884)
chr6 (20-243)||(9984862-9985087)


Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 9984884 - 9984574
Alignment:
Q  1 ttttattgactctacatttcaataaggtatcttaagtttgtgtttttccttcatttaaattagacaaagctttgggagtctttatcaataagcccatcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9984884 ttttattgactctacatttcaataaggtatcttaagtttgtgtttttccttcaattaaattagacaaagctttgggagtctttatcaataagcccatcaa 9984785  T
Q  101 attgctcgattgatcatgtcataacgtttgatcaacatttttgtgagtaaaccctaattgggtcgtaccagtgagtatttttctgaaattgtgtgcaatt 200  Q
    |||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||  |  |||||||||||||||||||||||||||||| ||||||    
T  9984784 attgctcgattgatcatgtcgtaacttttgatcaatatttttgtgagtaaaccctaatcagaccgtaccagtgagtatttttctgaaattgtgagcaatt 9984685  T
Q  201 tgaggggcttatagacatgtttttattgactctacatttcaatttttctccaatagtgatattttctaaaagttacccaccttattagatctttatctcg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9984684 tgaggggcttatagacatgtttttattgactctacatttcaatttttctccaatagtgatattttctaaaagctacccaccttattagatctttatctcg 9984585  T
Q  301 taaaacattca 311  Q
    |||||||||||    
T  9984584 taaaacattca 9984574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 9985087 - 9984862
Alignment:
Q  20 caataaggtatcttaagtttgtgtttttccttcatttaaattagacaaagctttgggagtctttatcaataagcccatcaaattgctcgattgatcatgt 119  Q
    |||||||||||||||||||| ||||||||||||| |||||||| |||| ||||||||||||||| ||||||| ||| |||||||||   |||||||| ||    
T  9985087 caataaggtatcttaagtttttgtttttccttcaattaaattaaacaa-gctttgggagtctttctcaataaacccctcaaattgca--attgatcaggt 9984991  T
Q  120 cataacgtttgatcaacatttttg-tgagtaaaccctaattgggtcgta----ccagtgagtatttttctgaaattgtgtgcaatttgaggggcttatag 214  Q
      |||  || |||| ||||||||| ||| | ||||||||| ||  ||||    ||| |||||| |||||||| | |||| ||||||||||||||||||||    
T  9984990 tgtaattttcgatcgacatttttggtgaatcaaccctaatcggaccgtaactcccaatgagtaattttctgacaatgtgagcaatttgaggggcttatag 9984891  T
Q  215 acatgtttttattgactctacatttcaat 243  Q
    |||||||||||||||||||||||||||||    
T  9984890 acatgtttttattgactctacatttcaat 9984862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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