View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7113_high_16 (Length: 413)
Name: NF7113_high_16
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7113_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 148 - 317
Target Start/End: Complemental strand, 11920966 - 11920797
Alignment:
| Q |
148 |
atgctaggtttaatgttatgaagttaatatagcttctaaatgattatagtaatagaccctatattgaatacttcaaagtcaatgttcttttcctcttcat |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11920966 |
atgctaggtttaatgttatgaagttaatatagcttctaaatgattatagtaatagaccctatattgaatacttcaaagtcaatgttcttttcctcttcat |
11920867 |
T |
|
| Q |
248 |
attttttgtgcgtctttaaaaatgcaaagtgaaattagagaagatatgcagtaaaattagtcattttgaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11920866 |
attttttgtgcgtctttaaaaatgcaaagtgaaattagagaagatatgcagtaaaattagtcattttgaa |
11920797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 11921064 - 11920952
Alignment:
| Q |
13 |
aatatacatctaattactcaattatttactttcctacttcttaataaaaattccatgtgccaatattggagctttttgattctcatatataatatattat |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11921064 |
aatacacatctaattactcaattatttactttcctacttcttaataaaaattccatgtgccaatattggagctttttgattctcatatataatatattat |
11920965 |
T |
|
| Q |
113 |
gctaggtttaatg |
125 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11920964 |
gctaggtttaatg |
11920952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 37896588 - 37896630
Alignment:
| Q |
13 |
aatatacatctaattactcaattatttactttcctacttctta |
55 |
Q |
| |
|
|||| ||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
37896588 |
aatacacatccaattactcagttatttactttcctacttctta |
37896630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University