View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7113_high_17 (Length: 413)
Name: NF7113_high_17
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7113_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 311 - 385
Target Start/End: Complemental strand, 36001651 - 36001579
Alignment:
| Q |
311 |
agcattgtgccaaggtattcatgtagtttatcctgcaacatacataaaatattactcatcaacaacagaaaaaga |
385 |
Q |
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| T |
36001651 |
agcattgtcccaaggtattcatgtagtttatcctgcaac--acacaaaatattactcatcaacaacagaaaaaga |
36001579 |
T |
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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 354
Target Start/End: Complemental strand, 36015580 - 36015546
Alignment:
| Q |
320 |
ccaaggtattcatgtagtttatcctgcaacataca |
354 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
36015580 |
ccaaggtattcatgtagtttatcctgcaacataca |
36015546 |
T |
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