View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7113_high_2 (Length: 687)

Name: NF7113_high_2
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7113_high_2
NF7113_high_2
[»] chr4 (6 HSPs)
chr4 (13-668)||(46865131-46865788)
chr4 (56-352)||(46901325-46901622)
chr4 (151-236)||(46874370-46874455)
chr4 (357-431)||(46891994-46892068)
chr4 (146-259)||(46892166-46892282)
chr4 (357-431)||(46874194-46874267)
[»] chr8 (1 HSPs)
chr8 (22-240)||(22689866-22690090)
[»] chr3 (6 HSPs)
chr3 (56-236)||(19847177-19847360)
chr3 (132-357)||(27300804-27301026)
chr3 (83-202)||(27310811-27310930)
chr3 (355-413)||(27300673-27300731)
chr3 (210-243)||(27310660-27310693)
chr3 (13-41)||(27310977-27311005)
[»] chr5 (1 HSPs)
chr5 (61-169)||(27441080-27441188)


Alignment Details
Target: chr4 (Bit Score: 546; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 13 - 668
Target Start/End: Complemental strand, 46865788 - 46865131
Alignment:
Q  13 catcaccaatgaccatgtttccaaaattctgtctgtggagtagaatccttatccagatgaagggtgtttccaagagcacaaaactcaactcagttctcca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46865788 catcaccaatgaccatgtttccaaaattctgtctgtggagtagaatccttatccagatgaagggtgtttccaagagcacaaaactcaactcagttctcca 46865689  T
Q  113 ctgcacttggcaggttgggaagaacaagaagtgaatcatcaatccaatcaccataaacacgattgatcttgtttaatttcaaccaaagtaaatgcatctt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46865688 ctgcacttggcaggttgggaagaacaagaagtgaatcatcaatccaatcaccataaacacgattgatcttgtttaatttcaaccaaagtaaatgcatctt 46865589  T
Q  213 cttagcctgctcctcttcctttgccacaagtcttgcagggaaggtggtaggtgcatatgcatcattggcagaacctgttaaggtttttcgcgaagttgga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||    
T  46865588 cttagcctgctcctcttcctttgccacaagtcttgcagggaaggtggtaggtgcatatgcatcattgccagaacctgttaaggcttttcgtgaagttgga 46865489  T
Q  313 atgatagcttttgttgaatttgctattgcaactgcagcttgaatgagtcagaatacgatacatggaaaccaaacagtttaaattgttacaatcatcttgt 412  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  46865488 ttgatagcttttgttgaatttgctattgcaactgcagcttgaatgagtcagaatacgatacatggaaaccaaacagtttaaattgttacaatcatcttga 46865389  T
Q  413 attctttgttcacaatatgtgaatacaagtaatcacacccannnnnnnnnnnnnaaggacagtgaccacgaatgttgcagagacgttaaggttttttagt 512  Q
    |||||||||||||||||||| ||||||||||||||||||||             ||||||||||||||| ||||||||||||||||||||||||||||||    
T  46865388 attctttgttcacaatatgtaaatacaagtaatcacacccaatatatatatataaaggacagtgaccacaaatgttgcagagacgttaaggttttttagt 46865289  T
Q  513 ctctaacactgcagctgcgttaaccatatatgaaaagtagagtatccatcgacacataccaaagtagagtactatccaac-nnnnnnnatatctgaaaag 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  46865288 ctctaacactgcagctgcgttaaccatatatgaaaagtagagtatccatcgacacataccaaagtagagtactatccaacttttttttatatctgaaaag 46865189  T
Q  612 caattttagtacctacttgtgtaaccacgagg-cctaacgaatatttggtatgagtat 668  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  46865188 caattttggtacctacttgtgtaaccacgaggacctaacgaatatttggtacgagtat 46865131  T

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Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 56 - 352
Target Start/End: Complemental strand, 46901622 - 46901325
Alignment:
Q  56 aatccttatccagatgaaggg-tgtttccaagagcacaaaactcaactcagttctccactgcacttggcaggttgggaagaacaagaagtgaatcatcaa 154  Q
    ||||||||| ||||||| ||| ||||||||||||||||||  |||  |||| |||||| |||||| |||| |||||||| ||||||  || |||||||||    
T  46901622 aatccttatacagatgagggggtgtttccaagagcacaaagttcacttcaggtctccattgcactaggcaagttgggaaaaacaagtggtcaatcatcaa 46901523  T
Q  155 tccaatcaccataaacacgattgatcttgtt---taatttcaaccaaagtaaatgcatcttcttagcctgctcctcttcctttgccacaagt---cttgc 248  Q
    ||||||||||||||| || ||||||||| ||   ||||||||||| |||||| ||| |||||||| |||||||||| ||||||| ||  |||   |||||    
T  46901522 tccaatcaccataaataccattgatcttcttgcctaatttcaacctaagtaagtgcttcttcttatcctgctcctcatcctttgtcatgagtagacttgc 46901423  T
Q  249 agggaaggtggtaggtgcatatgcatcattggcagaacctgttaaggtttttcgcgaagttggaatgatagcttttgttgaatttgctattgcaactgca 348  Q
     | |||||| ||||     || | ||||||||||  ||||||| ||| |||| | |||||||||||||||| ||||||||| ||| |||| |||||||||    
T  46901422 ggtgaaggtagtag-----ta-gaatcattggcaatacctgttgaggcttttggtgaagttggaatgatagattttgttgagtttactatggcaactgca 46901329  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 46874455 - 46874370
Alignment:
Q  151 tcaatccaatcaccataaacacgattgatcttgtttaatttcaaccaaagtaaatgcatcttcttagcctgctcctcttcctttgc 236  Q
    |||||||||||||| |||| ||||||||||| | | |||||||||| ||||| | |  ||||||| ||||||||||||||||||||    
T  46874455 tcaatccaatcaccgtaaatacgattgatctggctgaatttcaacccaagtatacgtttcttctttgcctgctcctcttcctttgc 46874370  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 357 - 431
Target Start/End: Complemental strand, 46892068 - 46891994
Alignment:
Q  357 gagtcagaatacgatacatggaaaccaaacagtttaaattgttacaatcatcttgtattctttgttcacaatatg 431  Q
    ||||||||| |  |||||||||||||||||||||| | |||||| |||||||||||| | |||| ||||||||||    
T  46892068 gagtcagaacaatatacatggaaaccaaacagtttcatttgttataatcatcttgtactttttgctcacaatatg 46891994  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 259
Target Start/End: Complemental strand, 46892282 - 46892166
Alignment:
Q  146 aatcatcaatccaatcaccataaacacgattgatcttgtttaatttcaaccaaagtaaatgcatcttcttagcctgctcctcttcctttgccacaagt-- 243  Q
    ||||||||||||||||||| |||| ||||||||||| | | |||||||||| ||||| | |  ||||| || | ||||| ||||||||| ||||||||      
T  46892282 aatcatcaatccaatcaccgtaaatacgattgatctggctgaatttcaacccaagtatacgtttcttcctaacatgctcttcttccttttccacaagtag 46892183  T
Q  244 -cttgcagggaaggtgg 259  Q
     ||||||||| ||||||    
T  46892182 acttgcaggggaggtgg 46892166  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 357 - 431
Target Start/End: Complemental strand, 46874267 - 46874194
Alignment:
Q  357 gagtcagaatacgatacatggaaaccaaacagtttaaattgttacaatcatcttgtattctttgttcacaatatg 431  Q
    ||||||||| |  |||||||||||||||| ||||  |||||||| |||||||||||| | |||| ||||||||||    
T  46874267 gagtcagaacaatatacatggaaaccaaaaagttgcaattgttataatcatcttgtaat-tttgctcacaatatg 46874194  T

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Target: chr8 (Bit Score: 104; Significance: 2e-51; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 22689866 - 22690090
Alignment:
Q  22 tgaccatgtttccaaaattct--gtctgtggagtagaatccttatccagatgaaggg-tgtttccaagagcacaaaactcaactcagttctccactgcac 118  Q
    |||| ||||||||||||||||  ||| | |||| |||||| |||||||||||| ||| ||||||||||||||||||| ||||||||| ||||| ||||||    
T  22689866 tgacgatgtttccaaaattctttgtcagcggagaagaatcattatccagatgagggggtgtttccaagagcacaaaattcaactcaggtctcctctgcac 22689965  T
Q  119 ttggcaggttgggaagaacaagaagtgaatcatcaatccaatcaccataaacacgattg---atcttgtttaatttcaaccaaagtaaatgcatcttctt 215  Q
    |||||  |||||| |||| |||| |||||||||||||||||||| |||| | |  ||||    |||||||||||||||||||||||||| || |||||||    
T  22689966 ttggctagttgggtagaataagaggtgaatcatcaatccaatcagcatatatagtattggtcttcttgtttaatttcaaccaaagtaaacgcttcttctt 22690065  T
Q  216 agcctgctcctcttcctttgccaca 240  Q
    |||||||||||||||||||||||||    
T  22690066 agcctgctcctcttcctttgccaca 22690090  T

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Target: chr3 (Bit Score: 90; Significance: 4e-43; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 56 - 236
Target Start/End: Complemental strand, 19847360 - 19847177
Alignment:
Q  56 aatccttatccagatgaagggtgtttccaagagcacaaaactcaactcagttctccactgcacttggcaggttgggaagaacaagaagtgaatcatcaat 155  Q
    ||||||||||||||||||| | |||||||||||||||||| |||||| || ||||| |||||||||||| |||||||| |||||||  ||||||||||||    
T  19847360 aatccttatccagatgaagtgagtttccaagagcacaaaattcaacttagatctcctctgcacttggcaagttgggaaaaacaagagatgaatcatcaat 19847261  T
Q  156 ccaatcaccataaacacgattgatct---tgtttaatttcaaccaaagtaaatgcatcttcttagcctgctcctcttcctttgc 236  Q
    ||||||| |||| | |  ||||||||   ||||||||||| ||||||||||| || |||||||||| |||||| ||||||||||    
T  19847260 ccaatcagcatatatagtattgatcttcgtgtttaatttccaccaaagtaaaggcttcttcttagcttgctccacttcctttgc 19847177  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 132 - 357
Target Start/End: Complemental strand, 27301026 - 27300804
Alignment:
Q  132 aagaacaagaagtgaatcatcaatccaatcaccataaacacgattgatcttgtttaatttcaaccaaagtaaatgcatcttcttagcctgctcctcttcc 231  Q
    |||||||||||||  ||||||||||||||||||||||| ||||||||||| | | |||||||||| ||||| | |  | ||||| ||||| || ||||||    
T  27301026 aagaacaagaagtcgatcatcaatccaatcaccataaatacgattgatctcgctgaatttcaacccaagtatacgttttttctttgcctgttcatcttcc 27300927  T
Q  232 tttgccacaagt---cttgcagggaaggtggtaggtgcatatgcatcattggcagaacctgttaaggtttttcgcgaagttggaatgatagcttttgttg 328  Q
    ||| ||||||||   ||||| ||| |||||||||      ||||||||||||||||| ||   ||||   || |  |||||||||| ||||| |||||||    
T  27300926 ttttccacaagtagacttgccggggaggtggtag------atgcatcattggcagaaactaacaaggcaattggtaaagttggaatcatagcgtttgttg 27300833  T
Q  329 aatttgctattgcaactgcagcttgaatg 357  Q
    |||||||||| ||||||||| ||| ||||    
T  27300832 aatttgctatagcaactgcaacttcaatg 27300804  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 83 - 202
Target Start/End: Complemental strand, 27310930 - 27310811
Alignment:
Q  83 caagagcacaaaactcaactcagttctccactgcacttggcaggttgggaagaacaagaagtgaatcatcaatccaatcaccataaacacgattgatctt 182  Q
    ||||||||||||| |||||| || |||||| ||||||| |||  || ||||||||||||  | |||||||||| ||||||||||||| ||||||||||||    
T  27310930 caagagcacaaaattcaactgaggtctccattgcacttagcaactttggaagaacaagagttcaatcatcaattcaatcaccataaatacgattgatctt 27310831  T
Q  183 gtttaatttcaaccaaagta 202  Q
    | | ||||| |||| |||||    
T  27310830 gctgaattttaacccaagta 27310811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 355 - 413
Target Start/End: Complemental strand, 27300731 - 27300673
Alignment:
Q  355 atgagtcagaatacgatacatggaaaccaaacagtttaaattgttacaatcatcttgta 413  Q
    ||||||||||| | |||||||| |||||||| ||||| |||||||| ||||||||||||    
T  27300731 atgagtcagaacaagatacatgaaaaccaaatagtttcaattgttataatcatcttgta 27300673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 243
Target Start/End: Complemental strand, 27310693 - 27310660
Alignment:
Q  210 cttcttagcctgctcctcttcctttgccacaagt 243  Q
    ||||||||||||||||||||||||||||||||||    
T  27310693 cttcttagcctgctcctcttcctttgccacaagt 27310660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 27311005 - 27310977
Alignment:
Q  13 catcaccaatgaccatgtttccaaaattc 41  Q
    |||||||||||||||||||||||||||||    
T  27311005 catcaccaatgaccatgtttccaaaattc 27310977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 61 - 169
Target Start/End: Complemental strand, 27441188 - 27441080
Alignment:
Q  61 ttatccagatgaagggtgtttccaagagcacaaaactcaactcagttctccactgcacttggcaggttgggaagaacaagaagtgaatcatcaatccaat 160  Q
    |||||||||||||||| |||||||||||||||||| ||||||||  ||| | || ||||||||| ||||||||||||||||  | ||||||| |||||||    
T  27441188 ttatccagatgaagggagtttccaagagcacaaaattcaactcatgtcttctcttcacttggcaagttgggaagaacaagagtttaatcatcgatccaat 27441089  T
Q  161 caccataaa 169  Q
    |||||||||    
T  27441088 caccataaa 27441080  T

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