View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7113_high_23 (Length: 362)
Name: NF7113_high_23
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7113_high_23 |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0415 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 176 - 362
Target Start/End: Original strand, 13212184 - 13212370
Alignment:
| Q |
176 |
catgatgagaaaagtgattaagtgaataacatttttggttaaaaaggaggacgagcacttccaccccaataaccttcagctggtaattggcatgaattga |
275 |
Q |
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| T |
13212184 |
catgatgagaaaagtgattaagtgaataacatttttggttaaaaaggaggacgagcacttccaccccaataaccttcagctggtaattggcatgaattga |
13212283 |
T |
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| Q |
276 |
gaagattttgaggaactccatggaaaagtgatgaagcatcaggatctgctacaagttgttgctgttgctggttctgctgctgttgtt |
362 |
Q |
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| T |
13212284 |
gaagattttgaggaactccatggaaaagtgatgaagcattaggatctgctacaagttgttgctgttgctggttctgctgctgttgtt |
13212370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 13212016 - 13212103
Alignment:
| Q |
9 |
acatcatcaagtagtcaacttaataccatgatcaaagaaaagtcttcaatttaaactaagttataaggagaatgaacaagtgatagat |
96 |
Q |
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| T |
13212016 |
acatcatcaagtagtcaacttaataccatgatcaaagaaaagtcttcaatttaaactaagttataaggagaatgaacaagtgatagat |
13212103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 216 - 293
Target Start/End: Complemental strand, 13555 - 13478
Alignment:
| Q |
216 |
aaaaaggaggacgagcacttccaccccaataaccttcagctggtaattggcatgaattgagaagattttgaggaactc |
293 |
Q |
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| T |
13555 |
aaaatggaggacgagcacttccacaccaataaccttcatgtagtaattggtatgaattgtgaaaattttgaagaactc |
13478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 216 - 293
Target Start/End: Original strand, 29845934 - 29846011
Alignment:
| Q |
216 |
aaaaaggaggacgagcacttccaccccaataaccttcagctggtaattggcatgaattgagaagattttgaggaactc |
293 |
Q |
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| T |
29845934 |
aaaatggaggacgagcacttccacaccaataaccttcatgtagtaattggtatgaattgtgaaaattttgaagaactc |
29846011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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