View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7113_high_25 (Length: 352)
Name: NF7113_high_25
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7113_high_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 16)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 122 - 341
Target Start/End: Original strand, 37412501 - 37412720
Alignment:
| Q |
122 |
accttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggtgaaattccttattccatagg |
221 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37412501 |
accttattgtaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggtgaaattccttattccatagg |
37412600 |
T |
|
| Q |
222 |
tcagttgaagtctctcaaccagttatcgcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctcactcaactaacacatttggac |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37412601 |
tcagttgaagtctctcaaccagttatcgcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctcactcaactaacacatttggac |
37412700 |
T |
|
| Q |
322 |
ctttcatttaacaaacttaa |
341 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
37412701 |
ctttcatttaacaaacttaa |
37412720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 37640928 - 37640587
Alignment:
| Q |
1 |
aagaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaac |
100 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| | || ||| |||||||||||||| |||||||| | | ||||||||||||||||||| | |
|
|
| T |
37640928 |
aagaatttgtcatcctctttggtttctcttagtctacgaaaaactgagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagat |
37640829 |
T |
|
| Q |
101 |
tagatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcagg |
200 |
Q |
| |
|
| |||||||||| |||| | |||||| ||| ||||||||| || |||||||||||||||||||||||||||| | ||| |||| || ||||||||| |
|
|
| T |
37640828 |
tggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttgaacctccgtttatctgctttctcagg |
37640729 |
T |
|
| Q |
201 |
tgaaattccttattccataggtcagttgaagtctctcaaccagttatcgcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctc |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| | || ||| ||| || || |||| |||| || |||||| |||||| ||||||||| |
|
|
| T |
37640728 |
tgaaattccttattccataggtcaattgaagtctcttactcaattagtcctttcagattgcaatttagatgggatggttcctctatctttgtggaacctc |
37640629 |
T |
|
| Q |
301 |
actcaactaacacatttggacctttcatttaacaaacttaat |
342 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
37640628 |
acccaactaacatatttggacctttcatttaataaacttaat |
37640587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 37697843 - 37697612
Alignment:
| Q |
1 |
aagaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaac |
100 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| | |||||| |||||||||||| || |||||||| | | ||||||||||||||||||| | |
|
|
| T |
37697843 |
aagaatttgtcatcctctttggtttctcttagtctacgaaacactgtgttgcaaggaaatatatcaagtgacatcctctctttacctaatcttcaaagat |
37697744 |
T |
|
| Q |
101 |
tagatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcagg |
200 |
Q |
| |
|
| |||||||||| |||| | |||||| ||| ||||||||| || ||||||||||||||||||||||||||| || ||||||| ||| ||||||||| |
|
|
| T |
37697743 |
tggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttagacctctcttacactgctttctcagg |
37697644 |
T |
|
| Q |
201 |
tgaaattccttattccataggtcagttgaagt |
232 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
37697643 |
tgaaattccttattccataggtcaattgaagt |
37697612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 37824951 - 37824716
Alignment:
| Q |
1 |
aagaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaac |
100 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| | |||||| |||||||||||| || |||||||| | | ||||||||||||||||||| | |
|
|
| T |
37824951 |
aagaatttgtcatcctctttggtttctcttagtctacgaaacactgtgttgcaaggaaatatatcaagtgacatcctctctttacctaatcttcaaagat |
37824852 |
T |
|
| Q |
101 |
tagatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcagg |
200 |
Q |
| |
|
| |||||||||| |||| | |||||| ||| ||||||||| || |||||||||||||||||||||||||||||| ||||||| || ||| ||||| |
|
|
| T |
37824851 |
tggatttgtcatttaatcataaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttggacctctcttcctctgctttttcagg |
37824752 |
T |
|
| Q |
201 |
tgaaattccttattccataggtcagttgaagtctct |
236 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37824751 |
tgaaattccttattccataggtcaattgaagtctct |
37824716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 37534156 - 37533816
Alignment:
| Q |
1 |
aagaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaac |
100 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| | ||| |||||||||||||| |||||||| | | ||||||||||||||||||| | |
|
|
| T |
37534156 |
aagaatttgtcatcctctttggtttctcttagtctatcagaaactgagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagat |
37534057 |
T |
|
| Q |
101 |
tagatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcagg |
200 |
Q |
| |
|
| ||||||||||||||||| |||||| ||| ||||||||| || ||||||||||||||||||||||||||||| |||||||| || ||| ||||| |
|
|
| T |
37534056 |
tggatttgtcatctaatgataaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttggtcctctctttctctgctttttcagg |
37533957 |
T |
|
| Q |
201 |
tgaaattccttattccataggtcagttgaagtctctcaaccagttatcgcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctc |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| | || ||| ||| | || |||| ||||| || |||||| |||||| ||||||||| |
|
|
| T |
37533956 |
tgaaattccttattccataggtcaattgaagtctcttactcaattagtcctttcattctgcaattttgatggaatggttcctctatctttgtggaacctc |
37533857 |
T |
|
| Q |
301 |
actcaactaacacatttggacctttcatttaacaaacttaa |
341 |
Q |
| |
|
|| ||||||||| ||||||| |||||| ||| |||||||| |
|
|
| T |
37533856 |
acccaactaacatatttggatctttcacataataaacttaa |
37533816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 37712680 - 37712340
Alignment:
| Q |
1 |
aagaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaac |
100 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| | ||||| |||||||||||| || |||||||| | | ||||||||||||||||||| | |
|
|
| T |
37712680 |
aagaatttgtcatcctctttggtttctcttagtctacgagacactgtgttgcaaggaaatatatcaagtgacatcctctctttacctaatcttcaaagat |
37712581 |
T |
|
| Q |
101 |
tagatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcagg |
200 |
Q |
| |
|
| |||||||||| |||| | |||||| ||| ||||||||| || ||||||||||||||||||||||||||||| ||||||| || ||| ||||| |
|
|
| T |
37712580 |
tggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttggtcctctcttcctctgctttttcagg |
37712481 |
T |
|
| Q |
201 |
tgaaattccttattccataggtcagttgaagtctctcaaccagttatcgcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctc |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| | || ||| ||| | || |||| |||| || |||||| |||||| ||||| ||| |
|
|
| T |
37712480 |
tgaaattccttattccataggtcaattgaagtctcttactcaattagtcctttcacattgcaattttgatgggatggttcctctatctttgtggaatctc |
37712381 |
T |
|
| Q |
301 |
actcaactaacacatttggacctttcatttaacaaacttaa |
341 |
Q |
| |
|
|| |||||||||||||||||||||||||| || |||||||| |
|
|
| T |
37712380 |
acccaactaacacatttggacctttcattgaataaacttaa |
37712340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 3 - 327
Target Start/End: Complemental strand, 37436761 - 37436437
Alignment:
| Q |
3 |
gaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaacta |
102 |
Q |
| |
|
|||||||||||| ||| |||| ||||||||||||| |||| |||||||||||||| |||||||| | | ||||||||||||||||||| | | |
|
|
| T |
37436761 |
gaatttgtcatcttctttggtttctcttagtctagcatccactcagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattg |
37436662 |
T |
|
| Q |
103 |
gatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggtg |
202 |
Q |
| |
|
|||||||||| |||| | |||||| ||| ||||||||| || |||||||||||||||||||||||||||| | ||| |||| || ||||||||||| |
|
|
| T |
37436661 |
gatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttgaacctccgtttatctgctttctcaggtg |
37436562 |
T |
|
| Q |
203 |
aaattccttattccataggtcagttgaagtctctcaaccagttatcgcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctcac |
302 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| | || ||| ||| || || |||| |||| || |||||| |||||| ||||||||||| |
|
|
| T |
37436561 |
aaattccttattccataggtcaattgaagtctcttactcaattagaccttttaggttgcaattttgatgggatggttcctctatctttgtggaacctcac |
37436462 |
T |
|
| Q |
303 |
tcaactaacacatttggacctttca |
327 |
Q |
| |
|
|||||||||| |||||||||||||| |
|
|
| T |
37436461 |
tcaactaacatatttggacctttca |
37436437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 37595380 - 37595149
Alignment:
| Q |
1 |
aagaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaac |
100 |
Q |
| |
|
|||||||| ||||||||| |||| |||||| |||| | |||||| | |||||||||||||| |||||||| | | ||||||||||||||||||| | |
|
|
| T |
37595380 |
aagaatttttcatcctctttggtttctcttcttctacgaaacactgggttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagat |
37595281 |
T |
|
| Q |
101 |
tagatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcagg |
200 |
Q |
| |
|
| |||||||||| |||||| |||||| ||| ||||||||| || ||||| |||||||||||||||||||||| | ||| |||| || ||| ||||| |
|
|
| T |
37595280 |
tggatttgtcatttaatgataaccttagtggtcaacttccaaagtccaacttgagcactcctctaaggtacttgaacctccgtttatctgctttttcagg |
37595181 |
T |
|
| Q |
201 |
tgaaattccttattccataggtcagttgaagt |
232 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
37595180 |
tgaaattccttattccataggtcaattgaagt |
37595149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 37412418 - 37412504
Alignment:
| Q |
1 |
aagaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacct |
87 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37412418 |
aagaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacattccctctttacct |
37412504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 37399916 - 37400256
Alignment:
| Q |
1 |
aagaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaac |
100 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| | ||| |||||||||||||| |||||||| | | ||||||||||||||||||| | |
|
|
| T |
37399916 |
aagaatttgtcatcctctttggtttctcttagtctatcagaaactgagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagat |
37400015 |
T |
|
| Q |
101 |
tagatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcagg |
200 |
Q |
| |
|
| |||||||||| |||| | |||||| ||| ||||||||| || ||||||||||||||||||||||||||||| ||||||| || ||| ||||| |
|
|
| T |
37400016 |
tggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttggtcctctcttcctctgctttttcagg |
37400115 |
T |
|
| Q |
201 |
tgaaattccttattccataggtcagttgaagtctctcaaccagttatcgcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctc |
300 |
Q |
| |
|
||||||||| ||||||||||| || ||||||| ||| | | ||| || | || |||| |||| || |||||| |||||| ||||||||| |
|
|
| T |
37400116 |
tgaaattccctattccataggccaattgaagtatcttactcgattagatttttcacggtgcaatttagatgggatggttcctctatctttgtggaacctc |
37400215 |
T |
|
| Q |
301 |
actcaactaacacatttggacctttcatttaacaaacttaa |
341 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
37400216 |
acccaactaacatatttggacctttcatttaataaacttaa |
37400256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 37703724 - 37703384
Alignment:
| Q |
1 |
aagaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaac |
100 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| | ||| |||||||||||||| |||||||| | | ||||||||||||||||||| | |
|
|
| T |
37703724 |
aagaatttgtcatcctctttggtttctcttagtctatcagaaactgagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagat |
37703625 |
T |
|
| Q |
101 |
tagatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcagg |
200 |
Q |
| |
|
| |||||||||| ||| | |||||| ||| ||||||||| | |||||||||| |||||||||| |||||| | ||||||| || ||| ||||| |
|
|
| T |
37703624 |
tggatttgtcattcaattataaccttagtggtcaacttccaaaatccaactggagctctcctctaagatacttgaacctctcttcctctgctttttcagg |
37703525 |
T |
|
| Q |
201 |
tgaaattccttattccataggtcagttgaagtctctcaaccagttatcgcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctc |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| | || ||| ||| | || |||| |||| || |||||| |||||| ||||| ||| |
|
|
| T |
37703524 |
tgaaattccttattccataggtcaattgaagtctcttactcaattagacctttcacattgcaatttagatgggatggttcctctatctttgtggaatctc |
37703425 |
T |
|
| Q |
301 |
actcaactaacacatttggacctttcatttaacaaacttaa |
341 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
37703424 |
acccaactaacatatttggacctttcatttaataaacttaa |
37703384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 37381439 - 37381674
Alignment:
| Q |
1 |
aagaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaac |
100 |
Q |
| |
|
|||||||||||||||||| |||| |||||| ||||||| | ||| | |||||||||||||| |||||||| | | ||||||||||||||| ||| || |
|
|
| T |
37381439 |
aagaatttgtcatcctctttggtttctcttggtctaggagaaactgggttgcaaggaaatttgtcaagtgacatcctctctttacctaatctccaaacac |
37381538 |
T |
|
| Q |
101 |
tagatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcagg |
200 |
Q |
| |
|
||||||| ||||||||| | | || | | ||||||| | | |||||||||||||||| | ||||||||||| |||||| || ||||||||| |
|
|
| T |
37381539 |
tagatttatcatctaataaatatctgagcagtcaacttccgaaatccaactggagcactcctttgaggtacttggacctctctcgcacccctttctcagg |
37381638 |
T |
|
| Q |
201 |
tgaaattccttattccataggtcagttgaagtctct |
236 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37381639 |
tgaaattccttattccataggccagttgaagtctct |
37381674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 78 - 182
Target Start/End: Complemental strand, 37429720 - 37429616
Alignment:
| Q |
78 |
ctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggat |
177 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| | |||||||||||||| ||| ||||||||| ||| ||||||||||||||| |||||||||||||| |
|
|
| T |
37429720 |
ctctttaccaaatcttcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggac |
37429621 |
T |
|
| Q |
178 |
ctctc |
182 |
Q |
| |
|
||||| |
|
|
| T |
37429620 |
ctctc |
37429616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 37392065 - 37392388
Alignment:
| Q |
1 |
aagaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaac |
100 |
Q |
| |
|
|||||| ||||||||||| |||| |||||||| ||||| | | | | |||||||||||||| |||||| | | | ||||||||||||||||||| || |
|
|
| T |
37392065 |
aagaatgtgtcatcctctttggtttctcttaggctaggagaaattgggttgcaaggaaatttgtcaagtgccatcctctctttacctaatcttcaaagac |
37392164 |
T |
|
| Q |
101 |
tagatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcagg |
200 |
Q |
| |
|
||||||||||| |||||| |||| || |||||||||| | ||||||||||||||||||||||||||||| || ||| | ||||||||| |
|
|
| T |
37392165 |
tagatttgtcaaataatgaa---cttagcggtaaacttccaaaatcaaactggagcactcctctaaggtacttggacctatctggcatcactttctcagg |
37392261 |
T |
|
| Q |
201 |
tgaaattccttattccataggtcagttgaagtctctcaaccagttatcgcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctc |
300 |
Q |
| |
|
||||||||| | || ||||| || ||||||| ||| | || ||| ||| | || |||| |||| || |||||| |||||| ||||||||| |
|
|
| T |
37392262 |
tgaaattcccaaatctataggccatttgaagtatcttactcaattagtcctttcatattgcaatttagatgggatggttcctctatctttgtggaacctc |
37392361 |
T |
|
| Q |
301 |
actcaactaacacatttggacctttca |
327 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
37392362 |
actcaactaacacatttggacctttca |
37392388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 341
Target Start/End: Complemental strand, 37697566 - 37697503
Alignment:
| Q |
278 |
ttcctcaatctttatggaacctcactcaactaacacatttggacctttcatttaacaaacttaa |
341 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||| ||||||| |||||| ||| |||||||| |
|
|
| T |
37697566 |
ttcctctatctttgtggaacctcactcaactaacatatttggatctttcaaataataaacttaa |
37697503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 278 - 327
Target Start/End: Complemental strand, 37824674 - 37824625
Alignment:
| Q |
278 |
ttcctcaatctttatggaacctcactcaactaacacatttggacctttca |
327 |
Q |
| |
|
|||||| |||||| ||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
37824674 |
ttcctctatctttgtggaacctcacccaactaacatatttggacctttca |
37824625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 14554094 - 14553768
Alignment:
| Q |
1 |
aagaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaac |
100 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||| ||||| | |||||||||||||| |||||||| | | |||||| || ||||||||| ||| |
|
|
| T |
14554094 |
aagaatttgtcatcctctttggtttctcttagtctagcaaacaccgggttgcaaggaaatttgtcaagtgacatactctctttgccaaatcttcaaaaac |
14553995 |
T |
|
| Q |
101 |
tagatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcagg |
200 |
Q |
| |
|
|||||||| | |||||| | |||| ||| ||||||||| | ||||||||| |||||||||||||||||| | ||| || || ||||||||| |
|
|
| T |
14553994 |
tagatttggtaggtaatgatggtcttagtggtcaacttccaaaatccaactggagtactcctctaaggtacttgtacctccattactctgctttctcagg |
14553895 |
T |
|
| Q |
201 |
tgaaattccttattccataggtcagttgaagtctctcaaccagttatcgcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctc |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| | || ||| ||| || || |||| |||| || |||||| |||||| ||||||||| |
|
|
| T |
14553894 |
tgaaattccttattccataggtcaattgaagtctcttactcatttagtcctttcagattgcaatttagatgggatggttcctctatctttgtggaacctc |
14553795 |
T |
|
| Q |
301 |
actcaactaacacatttggacctttca |
327 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
14553794 |
actcaactaacacatttggacctttca |
14553768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 24216844 - 24217075
Alignment:
| Q |
1 |
aagaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaac |
100 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||| |||| | |||||||||||| | |||||||| | | ||||||||| ||||||||| ||| |
|
|
| T |
24216844 |
aagaatttgtcatcctctttggtttctcttagtctagcatccactggattgcaaggaaatatgtcaagtgacatcctctctttaccaaatcttcaaaaac |
24216943 |
T |
|
| Q |
101 |
tagatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcagg |
200 |
Q |
| |
|
||||||||||||| ||| | |||||| ||| ||| |||||| || ||||||||||||||| |||||||||||||| |||||||| || ||||||||| |
|
|
| T |
24216944 |
tagatttgtcatcgaatcaagaccttcgtggtaaatttccaacgtccaactggagcactcccctaaggtacttggacctctctttctctggtttctcagg |
24217043 |
T |
|
| Q |
201 |
tgaaattccttattccataggtcagttgaagt |
232 |
Q |
| |
|
||||||| | || || || ||||||||||||| |
|
|
| T |
24217044 |
tgaaatttcatactctattggtcagttgaagt |
24217075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 4 - 341
Target Start/End: Original strand, 16841983 - 16842320
Alignment:
| Q |
4 |
aatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactag |
103 |
Q |
| |
|
||||||||||||||| |||| |||||| ||||| |||||| |||||||||||||||| ||||||| | | |||||| | ||||||||| ||||| |
|
|
| T |
16841983 |
aatttgtcatcctctttggtttctcttcatctagcaaacactggtttgcaaggaaatttgttaagtgacatactctctttgtcaaatcttcaaagactag |
16842082 |
T |
|
| Q |
104 |
atttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggtga |
203 |
Q |
| |
|
|||||||| |||| | ||||||| ||| ||||||||| | |||||||||||||||||||||||||||| | |||||| ||| ||||||||| || |
|
|
| T |
16842083 |
atttgtcacataatcaagaccttagtggtcaacttccaaaatccaactggagcactcctctaaggtacttgtacctctctcatactgctttctcaggaga |
16842182 |
T |
|
| Q |
204 |
aattccttattccataggtcagttgaagtctctcaaccagttatcgcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctcact |
303 |
Q |
| |
|
||| | |||||||||||||| || |||||||| | || ||| ||| | || |||| |||| || |||||| |||||| |||||||||||| |
|
|
| T |
16842183 |
aatctcctattccataggtcaattaaagtctcttactcatttagtcctttcattttgcaattttgatgggatggttcctctatctttgtggaacctcact |
16842282 |
T |
|
| Q |
304 |
caactaacacatttggacctttcatttaacaaacttaa |
341 |
Q |
| |
|
||||||||| ||||||| |||||| ||| |||||||| |
|
|
| T |
16842283 |
caactaacatatttggatctttcaaataataaacttaa |
16842320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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