View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7113_high_30 (Length: 318)
Name: NF7113_high_30
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7113_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 81 - 306
Target Start/End: Original strand, 44753377 - 44753605
Alignment:
| Q |
81 |
atggcgagttttagcatggaccaattgcataattttcccatctcaagctcatttgtttttacgggtcactaccttgtttcttccggttattacctttaca |
180 |
Q |
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| T |
44753377 |
atggcgagttttagcatggaccaattgcataatttttccatcttaggctcatttgtttttacgggttactaccttgtttcttccggttattacctttaca |
44753476 |
T |
|
| Q |
181 |
ttacc---nnnnnnnnaaatcgattatacatatatatcacaggtgttaacagcagaannnnnnnnnnnnnaatnnnnnnntcacatgtattatcaacaca |
277 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||||| || ||| |||||||||||||||||||| |
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| T |
44753477 |
ttaccttttttttttaaaatcgattatacatatatatcacaagtgttaacagcataattttttcttttttaataaaaaaatcacatgtattatcaacaca |
44753576 |
T |
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| Q |
278 |
agccagttttccgaacccgagcacatatt |
306 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
44753577 |
agccagttttccgaacccgagcacatatt |
44753605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 83 - 306
Target Start/End: Complemental strand, 37760890 - 37760666
Alignment:
| Q |
83 |
ggcgagttttagcatggaccaattgcataattttcccatctcaagctcatttgtttttacgggtcactaccttgtttcttccggttattacctttacatt |
182 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37760890 |
ggcgagttttagcatagaccaattgcataattttcccatcttaggctcatttgtttttacgggtcactaccttgtttcttccggttattacctttacatt |
37760791 |
T |
|
| Q |
183 |
a-ccnnnnnnnnaaatcgattatacatatatatcacaggtgttaacagcagaannnnnnnnnnnnnaatnnnnnnntcacatgtattatcaacacaagcc |
281 |
Q |
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| T |
37760790 |
atcttttttttaaaatcgattatacatatatatcacaagtgttaacaacataattttttcttttttaataaaaaaatcacatgtattatcaacacaagcc |
37760691 |
T |
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| Q |
282 |
agttttccgaacccgagcacatatt |
306 |
Q |
| |
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| T |
37760690 |
agttttccgaacccgagcatatatt |
37760666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 83 - 234
Target Start/End: Original strand, 35181727 - 35181879
Alignment:
| Q |
83 |
ggcgagttttagcatggaccaattgcataattttcccatctcaagctcatttgtttttacgggtcactaccttgtttcttccggttattacctttacatt |
182 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||| |
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| T |
35181727 |
ggcgagttttagcatggaccaattgcataattttcccatcttaggctcatttatttttacgggtcattaccttgttccttcccgttattacctttacatt |
35181826 |
T |
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| Q |
183 |
acc-nnnnnnnnaaatcgattatacatatatatcacaggtgttaacagcagaa |
234 |
Q |
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| T |
35181827 |
acctttttttttaaatcgattatacatatatatcacaggtgttaacagcagaa |
35181879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 83 - 306
Target Start/End: Complemental strand, 24175525 - 24175299
Alignment:
| Q |
83 |
ggcgagttttagcatggaccaattgcataattttcccatctcaagctcatttgtttttacgggtcactaccttgtttcttccggttattacctttacatt |
182 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24175525 |
ggcgagttttagcatggaccaattgcataattttcccatcttaggctcatttatttttacgggtcactaccttgtttctttcggttattacctttacatt |
24175426 |
T |
|
| Q |
183 |
ac---cnnnnnnnnaaatcgattatacatatatatcacaggtgttaacagcagaa-nnnnnnnnnnnnnaatnnnnnnntcacatgtattatcaacacaa |
278 |
Q |
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|| ||||| ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||| |
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| T |
24175425 |
acttttttttttttaaatc-attatacatatatatcacaggtgttaacaacagaatttttttcatttttaataaaaaaatcacatgtattatcaacacaa |
24175327 |
T |
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| Q |
279 |
gccagttttccgaacccgagcacatatt |
306 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
24175326 |
gccagttttccgaacccgagcacatatt |
24175299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 35181905 - 35181953
Alignment:
| Q |
258 |
tcacatgtattatcaacacaagccagttttccgaacccgagcacatatt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35181905 |
tcacatgtattatcaacacaagccagttttccgaacccgagcacatatt |
35181953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 41364914 - 41364833
Alignment:
| Q |
1 |
tttcatgtgtttagcgcagtgcttgcttttgatgaaaagcatgcaacatgacccatgcatgtgtgatattttaatcatatat |
82 |
Q |
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| T |
41364914 |
tttcatgtgtttagcgcagtgcttgcttttgatgaaaagcatgcaacatgacccatgcatgtgtgatattttaatcatatat |
41364833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 86 - 177
Target Start/End: Original strand, 13229148 - 13229239
Alignment:
| Q |
86 |
gagttttagcatggaccaattgcataattttcccatctcaagctcatttgtttttacgggtcactaccttgtttcttccggttattaccttt |
177 |
Q |
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||||||||||||| ||| ||||||||||| ||||||| | ||||||||||||||||| ||||||| ||||||||| ||||||||||||||| |
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| T |
13229148 |
gagttttagcatgagccagttgcataatttccccatcttaggctcatttgtttttacgagtcactatcttgtttctaccggttattaccttt |
13229239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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