View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7113_high_40 (Length: 258)

Name: NF7113_high_40
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7113_high_40
NF7113_high_40
[»] chr4 (11 HSPs)
chr4 (3-241)||(46868724-46868962)
chr4 (11-241)||(30783444-30783675)
chr4 (1-159)||(46867459-46867617)
chr4 (3-122)||(51537276-51537395)
chr4 (3-101)||(41982690-41982788)
chr4 (1-127)||(20447182-20447305)
chr4 (14-127)||(51537996-51538109)
chr4 (1-134)||(32839029-32839161)
chr4 (2-101)||(53807847-53807946)
chr4 (1-114)||(20445858-20445970)
chr4 (2-46)||(976234-976278)
[»] chr8 (4 HSPs)
chr8 (3-241)||(7000658-7000897)
chr8 (1-175)||(7000990-7001164)
chr8 (28-159)||(8085438-8085570)
chr8 (3-96)||(33136779-33136872)
[»] chr5 (12 HSPs)
chr5 (1-166)||(19831806-19831972)
chr5 (1-134)||(19827918-19828051)
chr5 (33-174)||(35891871-35892013)
chr5 (2-134)||(14062316-14062448)
chr5 (2-89)||(14575277-14575364)
chr5 (11-159)||(35891515-35891660)
chr5 (27-127)||(23136808-23136908)
chr5 (28-134)||(8588856-8588962)
chr5 (13-159)||(38226146-38226289)
chr5 (34-135)||(31910107-31910208)
chr5 (1-65)||(6037129-6037193)
chr5 (1-134)||(8590318-8590451)
[»] chr6 (5 HSPs)
chr6 (2-174)||(10457926-10458099)
chr6 (3-136)||(32056566-32056699)
chr6 (2-120)||(6421558-6421676)
chr6 (1-101)||(20995795-20995891)
chr6 (1-101)||(16118647-16118747)
[»] chr3 (9 HSPs)
chr3 (1-133)||(6761822-6761954)
chr3 (2-118)||(1724148-1724264)
chr3 (1-89)||(53114365-53114453)
chr3 (6-127)||(9829901-9830022)
chr3 (1-69)||(6454392-6454460)
chr3 (1-134)||(31313424-31313556)
chr3 (2-62)||(1722878-1722938)
chr3 (3-41)||(9827982-9828020)
chr3 (98-159)||(27647907-27647969)
[»] chr7 (7 HSPs)
chr7 (1-127)||(47304164-47304289)
chr7 (2-134)||(20268273-20268406)
chr7 (1-133)||(5987790-5987922)
chr7 (3-86)||(30335085-30335168)
chr7 (1-118)||(30332334-30332450)
chr7 (86-127)||(20268868-20268909)
chr7 (11-49)||(20268883-20268921)
[»] chr1 (7 HSPs)
chr1 (1-134)||(12659149-12659284)
chr1 (11-134)||(38518065-38518188)
chr1 (11-133)||(12664052-12664174)
chr1 (1-134)||(12657808-12657944)
chr1 (1-63)||(12664410-12664472)
chr1 (83-153)||(49539803-49539874)
chr1 (11-125)||(6334229-6334343)
[»] scaffold0049 (2 HSPs)
scaffold0049 (143-241)||(62815-62913)
scaffold0049 (1-48)||(63006-63053)
[»] chr2 (3 HSPs)
chr2 (11-159)||(14815303-14815450)
chr2 (32-134)||(26510973-26511075)
chr2 (2-115)||(26511693-26511806)
[»] scaffold0426 (1 HSPs)
scaffold0426 (1-165)||(3427-3591)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 3 - 241
Target Start/End: Complemental strand, 46868962 - 46868724
Alignment:
Q  3 aaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatca 102  Q
    |||||||||||||||| || |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46868962 aaagtcactacaaattatttcactgtcaaatcgatcattgaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatca 46868863  T
Q  103 atgaattatttatcttatctatcaaactgatctcaataatgtcaaataaatgttaaatactaaacgaatgtgaagaatccccaaggaacaagtgaggaat 202  Q
    |||||||||||||||||||||||||||||||||||  | ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  46868862 atgaattatttatcttatctatcaaactgatctcagcactgtcaaataaatcctaaatactaaacgaatgtgaagaatccccaaggaacaagtgaggaat 46868763  T
Q  203 aatagttaaacattattgtttcaacacctcctaataaat 241  Q
    ||| |||||||||||||||||||||||||||||||||||    
T  46868762 aattgttaaacattattgtttcaacacctcctaataaat 46868724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 30783444 - 30783675
Alignment:
Q  11 tacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatcaatgaatta 110  Q
    ||||||||||||| || ||||||| |||| ||||||||||  ||||||| |||||||||  |||| || |||||||| | | |||||||||  |||||||    
T  30783444 tacaaattgttactctatcaaatcaatccataaattattccataaaaattaagttggtctctgaattacgtcactcaatattaaatcgatccctgaatta 30783543  T
Q  111 tttatcttatctatcaaactgatctca--ataatgtcaaataaatgttaaatactaaacgaatgtgaagaatccccaaggaacaagtgaggaataatagt 208  Q
    ||||||  |||||||||  ||||| ||  ||| |||||||||||||||||| |||||| ||| ||||| |  ||||||||||||||| |||||||| |||    
T  30783544 tttatcaaatctatcaatttgatc-catgatactgtcaaataaatgttaaaaactaaaagaacgtgaaaatgccccaaggaacaagttaggaataacagt 30783642  T
Q  209 taaacattattgtttcaacacctcctaataaat 241  Q
    ||||||||||||||||| |||||||||||||||    
T  30783643 taaacattattgtttcagcacctcctaataaat 30783675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 46867459 - 46867617
Alignment:
Q  1 tgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgat 100  Q
    ||||||| | || ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||  | || ||||||||||||| ||||||||||    
T  46867459 tgaaagtaattataaattgttacactatcaaatcgatccttgaattattcattaaaaatcaagttggtc-ctaaattatgtcactcactatcaaatcgat 46867557  T
Q  101 caatgaattatttatcttatctatcaaactgat-ctcaataatgtcaaataaatgttaaa 159  Q
    | ||||||||||||| |||| ||||||  |||| ||  ||| | ||||||||||||||||    
T  46867558 ctatgaattatttattttatttatcaatttgatccttgatactatcaaataaatgttaaa 46867617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 51537276 - 51537395
Alignment:
Q  3 aaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatca 102  Q
    ||||||| |||||||||||||||||||||||| |||| | || |||||||||||||| ||||| |||  || | ||||||||||||| ||||||||||||    
T  51537276 aaagtcattacaaattgttacactgtcaaatcaatccctgaactattcattaaaaattaagttagtccctggattatgtcactcactatcaaatcgatca 51537375  T
Q  103 atgaattatttatcttatct 122  Q
     | |||||||||||||||||    
T  51537376 cttaattatttatcttatct 51537395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 41982788 - 41982690
Alignment:
Q  3 aaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatc 101  Q
    ||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||  |||| ||||| ||||||| |||||| ||||    
T  41982788 aaagtcattacaaattgttacactatcaaatcgatctttaaattattcattaaaaatcaagttggtccatgaattatgtaactcactatcaaattgatc 41982690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 20447305 - 20447182
Alignment:
Q  1 tgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgat 100  Q
    ||||||||| |||||||||| ||  |||||||| ||||||| | |||||||||||||||||||||||||  |||| || |||||||||| |||||| |||    
T  20447305 tgaaagtcaatacaaattgtaac--tgtcaaattgatccttgatttattcattaaaaatcaagttggtccatgaatta-gtcactcactatcaaattgat 20447209  T
Q  101 caatgaattatttatcttatctatcaa 127  Q
    |  ||||||||||||||||||||||||    
T  20447208 ccctgaattatttatcttatctatcaa 20447182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 51538109 - 51537996
Alignment:
Q  14 aaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatcaatgaattattt 113  Q
    ||||||||||||| |  |||  |||||| |||||||||||||| ||  ||||||||  |||| ||||||||||| | ||||||||||| |||||||||||    
T  51538109 aaattgttacactttataattaatccttgaattattcattaaagattgagttggtccctgaattatgtcactcattatcaaatcgatccatgaattattt 51538010  T
Q  114 atcttatctatcaa 127  Q
    ||||||||||||||    
T  51538009 atcttatctatcaa 51537996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 32839161 - 32839029
Alignment:
Q  1 tgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgat 100  Q
    ||||||||| |||||||||||||| |||||| ||||||| | ||||||||| ||| ||||||| ||||| ||||| | |||||||| || | |||| | |    
T  32839161 tgaaagtcattacaaattgttacattgtcaagtcgatccctgaattattcactaagaatcaagatggtccttgaattttgtcactccctat-aaattggt 32839063  T
Q  101 caatgaattatttatcttatctatcaaactgatc 134  Q
    |  |||||||||||||||| |||||||| |||||    
T  32839062 ctctgaattatttatcttaactatcaaattgatc 32839029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 53807847 - 53807946
Alignment:
Q  2 gaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatc 101  Q
    |||||||  ||||||||||||||| | ||||| |||||||||||||||||||||||| ||||||||||  | || |||||||| |||| |||||| ||||    
T  53807847 gaaagtcgttacaaattgttacaccgacaaattgatccttaaattattcattaaaaaacaagttggtccctaaattatgtcacccactatcaaatagatc 53807946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 20445858 - 20445970
Alignment:
Q  1 tgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgat 100  Q
    |||||||||  |||||||||||||| ||||| || |||| | ||||||| |||||||||||||  ||||  |||| ||||||| | ||| ||||||| ||    
T  20445858 tgaaagtcaacacaaattgttacaccgtcaagtcaatcc-tgaattattgattaaaaatcaagcaggtccctgaattatgtcaatgactatcaaatcaat 20445956  T
Q  101 caatgaattattta 114  Q
    |  | |||||||||    
T  20445957 ctctaaattattta 20445970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 976278 - 976234
Alignment:
Q  2 gaaagtcactacaaattgttacactgtcaaatcgatccttaaatt 46  Q
    |||||||| |||||||||||||||| ||||||| |||| ||||||    
T  976278 gaaagtcattacaaattgttacactatcaaatctatccctaaatt 976234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 7000658 - 7000897
Alignment:
Q  3 aaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatca 102  Q
    ||||||| || |||||| |||| | ||||||| |||  |||||||||| |||||||||||||||||| ||||| ||||||||| | | |||||||||||     
T  7000658 aaagtcattataaattggtacattatcaaatcaatctctaaattattccttaaaaatcaagttggtccttgaattatgtcacttaatatcaaatcgatct 7000757  T
Q  103 atgaattatttatcttatctatcaaactgatctc-aataatgtcaaataaatgttaaatactaaacgaatgtgaagaatccccaaggaacaagtgaggaa 201  Q
     ||||||||||||| ||||||||||  |||||||  |||  |||||||||||| |||| |||||| ||| ||||||||  | |||| || |||| |||||    
T  7000758 ctgaattatttatcatatctatcaatttgatctctgataccgtcaaataaatgctaaaaactaaaagaacgtgaagaacacacaagaaagaagttaggaa 7000857  T
Q  202 taatagttaaacattattgtttcaacacctcctaataaat 241  Q
    ||| | ||||||||||||||||||| |||| |||||||||    
T  7000858 taacaattaaacattattgtttcaataccttctaataaat 7000897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 7001164 - 7000990
Alignment:
Q  1 tgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgat 100  Q
    ||||||||| ||||||||||||| ||||||||||||||   ||||||||| ||||||||||||| ||||  |||| ||||||||||| | |||||| |||    
T  7001164 tgaaagtcattacaaattgttacgctgtcaaatcgatcacgaaattattccttaaaaatcaagtgggtccatgaattatgtcactcaatttcaaatggat 7001065  T
Q  101 caatgaattatttatcttatctatcaaactgat-ctcaataatgtcaaataaatgttaaatactaaacgaatgtga 175  Q
    |  | ||||||||||  ||||||||||  |||| ||  ||| |||||||||||||||||| |||||| | ||||||    
T  7001064 c-ctaaattatttattatatctatcaatttgatccttgatattgtcaaataaatgttaaacactaaaagcatgtga 7000990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 8085438 - 8085570
Alignment:
Q  28 tcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatcaatgaattatttatcttatctatcaa 127  Q
    |||||||||||  |  |||| ||||||||||||||| |||||  |||| ||||||||||||| |||||||||||| | |||||||||||||| ||||| |    
T  8085438 tcaaatcgatcactggattactcattaaaaatcaagatggtccatgaattatgtcactcactatcaaatcgatcattaaattatttatcttaactatcga 8085537  T
Q  128 actgatctc-aataatgtcaaataaatgttaaa 159  Q
    |||||| ||  ||| ||||||||||||| ||||    
T  8085538 actgatatctgatattgtcaaataaatgctaaa 8085570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 33136779 - 33136872
Alignment:
Q  3 aaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaat 96  Q
    ||||||| ||||||||||| || |||||||||||||| ||||||||||||| ||||||||| | ||| ||||| |||||||||| || ||||||    
T  33136779 aaagtcattacaaattgttgcaatgtcaaatcgatccctaaattattcattgaaaatcaagatcgtccttgaattatgtcactcgctatcaaat 33136872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 19831972 - 19831806
Alignment:
Q  1 tgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgat 100  Q
    ||||||||| |||||||||||||| |||||||| ||||||| ||||||| ||||||||||||| |||||  |||| ||||||| ||||| ||||||||||    
T  19831972 tgaaagtcattacaaattgttacattgtcaaattgatccttgaattattaattaaaaatcaagatggtctgtgaattatgtcaatcactatcaaatcgat 19831873  T
Q  101 caatgaattatttatcttatctatcaaactgatctc-aataatgtcaaataaatgttaaatactaaa 166  Q
    || |||||||||||||||| | ||||||||||||||  ||| ||||||||||||| |||| ||||||    
T  19831872 cattgaattatttatcttaacgatcaaactgatctctgatattgtcaaataaatgctaaaaactaaa 19831806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 19827918 - 19828051
Alignment:
Q  1 tgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgat 100  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||  |||| ||||||||||| | ||||||||||    
T  19827918 tgaaagtcattacaaattgttacactgtcaaatcgatccctaaattattcattaaaaatcaagatggtccatgaattatgtcactcaatatcaaatcgat 19828017  T
Q  101 caatgaattatttatcttatctatcaaactgatc 134  Q
       | |||||||||||||  |||| |||||||||    
T  19828018 tcttaaattatttatcttgactataaaactgatc 19828051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 33 - 174
Target Start/End: Complemental strand, 35892013 - 35891871
Alignment:
Q  33 tcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatcaatgaattatttatcttatctatcaaactga 132  Q
    ||||||| ||||||||||||||||||||||||||||  ||||| |||||||| |||| ||||||| ||| ||||||||||||||||||| ||||| ||||    
T  35892013 tcgatccctaaattattcattaaaaatcaagttggttcttgaattatgtcacccactatcaaatctatctatgaattatttatcttatcaatcaatctga 35891914  T
Q  133 tctc-aataatgtcaaataaatgttaaatactaaacgaatgtg 174  Q
    ||||  ||  | |||||||||| ||||| |||||| |||||||    
T  35891913 tctctgatgctatcaaataaatattaaaaactaaaagaatgtg 35891871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 134
Target Start/End: Original strand, 14062316 - 14062448
Alignment:
Q  2 gaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatc 101  Q
    |||||| | ||||||| ||||||||||||||||||||| ||||||| ||||| |||||||||||||||  | || ||||||| ||| | |||||||  ||    
T  14062316 gaaagtaattacaaatcgttacactgtcaaatcgatccctaaattactcattgaaaatcaagttggtccataaattatgtcattcaatatcaaatcattc 14062415  T
Q  102 aatgaattatttatcttatctatcaaactgatc 134  Q
     |||||||||||||||||| ||||||| |||||    
T  14062416 tatgaattatttatcttatatatcaaattgatc 14062448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 14575277 - 14575364
Alignment:
Q  2 gaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcact 89  Q
    |||||||| |||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||   |||| |||||||||||||    
T  14575277 gaaagtcattacaaattgttacattgtcaaatcaatccctaaattattcattaaaaatcaagttggttcatgaattatgtcactcact 14575364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 35891515 - 35891660
Alignment:
Q  11 tacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatcaatgaatta 110  Q
    |||||||||||||||| |||||| ||||| ||||||||||||||||||    |||||||  |||| | | | ||||||| |||||| |||| ||||||||    
T  35891515 tacaaattgttacactatcaaattgatccataaattattcattaaaaa----gttggtccctgaattgtattactcactatcaaattgatccatgaatta 35891610  T
Q  111 tttatcttatctatcaaactgatc-tcaataatgtcaaataaatgttaaa 159  Q
    ||||| ||||||||||| || ||| |  ||| ||||||||||||||||||    
T  35891611 tttattttatctatcaatctaatctttgatattgtcaaataaatgttaaa 35891660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 127
Target Start/End: Original strand, 23136808 - 23136908
Alignment:
Q  27 gtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatcaatgaattatttatcttatctatca 126  Q
    ||||||||||||  | ||||||||||||||||||||||||||   |||| ||||||||||||| |||||| ||||  || |||||||||| |||||||||    
T  23136808 gtcaaatcgatctctgaattattcattaaaaatcaagttggttcatgaattatgtcactcactatcaaattgatccctgtattatttatcgtatctatca 23136907  T
Q  127 a 127  Q
    |    
T  23136908 a 23136908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 134
Target Start/End: Original strand, 8588856 - 8588962
Alignment:
Q  28 tcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatcaatgaattatttatcttatctatcaa 127  Q
    |||||||||||||||||||||| | ||||||| ||| ||||| ||||| |||||||||   | |||||||||||  | ||||||| |||||| |||||||    
T  8588856 tcaaatcgatccttaaattatttactaaaaattaagatggtccttgaattatgtcacttcatatcaaatcgatcccttaattattcatcttaactatcaa 8588955  T
Q  128 actgatc 134  Q
    | |||||    
T  8588956 attgatc 8588962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 38226289 - 38226146
Alignment:
Q  13 caaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatcaatgaattatt 112  Q
    |||||||||||||| ||||||| | || | |||||||||    ||||||| ||||||  |||| ||||||||||| | ||||| ||||||   |||||||    
T  38226289 caaattgttacactatcaaatcaacccctgaattattca----aaatcaaattggtccatgaattatgtcactcattatcaaaacgatcaccaaattatt 38226194  T
Q  113 tatcttatctatcaaactgat-ctcaataatgtcaaataaatgttaaa 159  Q
    ||||||||||||||| ||||| ||  ||| | ||||||||||||||||    
T  38226193 tatcttatctatcaatctgatccttgatactatcaaataaatgttaaa 38226146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 135
Target Start/End: Complemental strand, 31910208 - 31910107
Alignment:
Q  34 cgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatcaatgaattatttatcttatctatcaaactgat 133  Q
    |||||| | ||||||||||||||||| ||| || || ||||| |||||| | ||||||||||| ||||  |||||| ||| |||||  ||||||||||||    
T  31910208 cgatccatgaattattcattaaaaattaagatgatctttgaactatgtctcacactgtcaaattgatccgtgaattgtttgtcttaattatcaaactgat 31910109  T
Q  134 ct 135  Q
    ||    
T  31910108 ct 31910107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 6037129 - 6037193
Alignment:
Q  1 tgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagtt 65  Q
    ||||||| | |||||||||||| ||||||||||||||   | |||||||||||||||||||||||    
T  6037129 tgaaagttattacaaattgttatactgtcaaatcgatttatgaattattcattaaaaatcaagtt 6037193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 8590451 - 8590318
Alignment:
Q  1 tgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgat 100  Q
    ||||| ||| || ||||||||| | |||||||||||||||| ||||||||  |||||| |||  ||| | ||||| |||||| ||  || |||||| |||    
T  8590451 tgaaaatcattataaattgttatattgtcaaatcgatccttgaattattccctaaaaaacaatatggcccttgaattatgtctcttcctatcaaattgat 8590352  T
Q  101 caatgaattatttatcttatctatcaaactgatc 134  Q
      ||| ||||||||||||| |||| ||| |||||    
T  8590351 atatggattatttatcttaactattaaattgatc 8590318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 2 - 174
Target Start/End: Complemental strand, 10458099 - 10457926
Alignment:
Q  2 gaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatc 101  Q
    |||||||| |||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||  |||| ||||||||||| | |||||||||||    
T  10458099 gaaagtcattacaaattgttacactgtcaaatcgatcgttgaattattcattaaaaatgaagttggtccctgaattatgtcactcattatcaaatcgatc 10458000  T
Q  102 aatgaattatttatcttatctatcaaactgatctc-aataatgtcaaataaatgttaaatactaaacgaatgtg 174  Q
      | ||||||||||||||||||| ||  |||||||  | | |||||||||||||||||| |||||| |||||||    
T  10457999 cctaaattatttatcttatctattaatatgatctctgagactgtcaaataaatgttaaaaactaaaagaatgtg 10457926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 32056699 - 32056566
Alignment:
Q  3 aaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatca 102  Q
    ||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||  | || ||||||||||||| ||||||  |||     
T  32056699 aaagtcattacaaattgttacattgtcaaattgatccttaaattattcattaaaaatcaagatgatccctaaattatgtcactcactatcaaattaatct 32056600  T
Q  103 atgaattatttatcttatctatcaaactgatctc 136  Q
     |||||||||||||||| |||||||| |||||||    
T  32056599 ctgaattatttatcttaactatcaaattgatctc 32056566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 6421558 - 6421676
Alignment:
Q  2 gaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatc 101  Q
    ||||||||||||||| ||| ||| |||||||| |||||||  |||||||||| ||||||||||| ||   |||| ||||||||||||| |||||||||||    
T  6421558 gaaagtcactacaaactgtcacattgtcaaattgatccttggattattcattcaaaatcaagttagtgtctgaattatgtcactcactatcaaatcgatc 6421657  T
Q  102 aatgaattatttatcttat 120  Q
      | |||||||||||||||    
T  6421658 cctaaattatttatcttat 6421676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 20995795 - 20995891
Alignment:
Q  1 tgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgat 100  Q
    ||||||||| ||| |||||||| | |||||||| ||||  |   ||||||||||||||||||| ||||| ||||  | ||||||||||| ||||||||||    
T  20995795 tgaaagtcattacgaattgttatagtgtcaaattgatcact---ttattcattaaaaatcaagatggtc-ttgagttttgtcactcactatcaaatcgat 20995890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 16118747 - 16118647
Alignment:
Q  1 tgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgat 100  Q
    ||||||||| |||||||| ||||| ||||||||  || ||  ||||||||||| ||||||||| | |||  | || ||| ||||||| | ||||||||||    
T  16118747 tgaaagtcattacaaatttttacattgtcaaattcatactcgaattattcattgaaaatcaagctagtccataaattatatcactcaatatcaaatcgat 16118648  T
Q  101 c 101  Q
    |    
T  16118647 c 16118647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 6761954 - 6761822
Alignment:
Q  1 tgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgat 100  Q
    ||||||||| |||||||||||| || ||||||| ||||| |||||||||||||||||| ||| ||||||  |||| ||||| ||||||||| ||||| ||    
T  6761954 tgaaagtcattacaaattgttagacggtcaaattgatccctaaattattcattaaaaaccaaattggtccctgaattatgttactcactgttaaatcaat 6761855  T
Q  101 caatgaattatttatcttatctatcaaactgat 133  Q
    |  ||||||||||||||||| |||||| |||||    
T  6761854 ccttgaattatttatcttatttatcaatctgat 6761822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 1724264 - 1724148
Alignment:
Q  2 gaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatc 101  Q
    |||||| | |||||||||||||||| |||||||||| | |  |||||| |||||||||||||||||||   ||| |||||||||| || | ||| |||||    
T  1724264 gaaagttattacaaattgttacactatcaaatcgatacctggattatttattaaaaatcaagttggtctcagaactatgtcactcgctattaaaccgatc 1724165  T
Q  102 aatgaattatttatctt 118  Q
      |||||||||||||||    
T  1724164 cttgaattatttatctt 1724148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 53114453 - 53114365
Alignment:
Q  1 tgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcact 89  Q
    ||||||||| |||||||||||| |||||  | | ||||| ||||||||||||||||||||||| |||||  |||| |||||||||||||    
T  53114453 tgaaagtcattacaaattgttatactgtggatttgatccctaaattattcattaaaaatcaagctggtccatgaattatgtcactcact 53114365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 127
Target Start/End: Complemental strand, 9830022 - 9829901
Alignment:
Q  6 gtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatcaatg 105  Q
    ||||||||||||| ||| ||| |||||||||| ||| ||||||||||||||||||| | |||||  | || |||| |||||  | ||||||| |||  ||    
T  9830022 gtcactacaaattattatactatcaaatcgatacttgaattattcattaaaaatcaggctggtctgtaaattatgacactctttatcaaatcaatccttg 9829923  T
Q  106 aattatttatcttatctatcaa 127  Q
    ||||||||| ||||| ||||||    
T  9829922 aattatttaacttatttatcaa 9829901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 6454392 - 6454460
Alignment:
Q  1 tgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtc 69  Q
    ||||||||| |||||||||||| || ||||||| ||||  |||||||||||||||||| ||| ||||||    
T  6454392 tgaaagtcattacaaattgttagacggtcaaattgatcactaaattattcattaaaaaccaaattggtc 6454460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 31313556 - 31313424
Alignment:
Q  1 tgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgat 100  Q
    ||||| ||| || |||||||| || ||||| || ||||||| ||||||||||||||||| ||| || |   | || ||| ||||||||  ||||||||||    
T  31313556 tgaaattcattaaaaattgttgcattgtcacatggatccttgaattattcattaaaaataaagatgatacctaaattatttcactcaccatcaaatcgat 31313457  T
Q  101 caatgaattatttatcttatctatcaaactgatc 134  Q
    | || ||||||||||||||  ||||||| |||||    
T  31313456 c-attaattatttatcttaaatatcaaattgatc 31313424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 1722878 - 1722938
Alignment:
Q  2 gaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaa 62  Q
    |||| ||| |||||||||||||||||||||||  |||| |||| ||||||||||| |||||    
T  1722878 gaaaatcattacaaattgttacactgtcaaattcatccctaaactattcattaaacatcaa 1722938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 9827982 - 9828020
Alignment:
Q  3 aaagtcactacaaattgttacactgtcaaatcgatcctt 41  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  9827982 aaagtcattacaaattgatacactgtcaaatcgatcctt 9828020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 27647969 - 27647907
Alignment:
Q  98 gatcaatgaattatttatcttatctatcaaactgat-ctcaataatgtcaaataaatgttaaa 159  Q
    |||| ||||||||||||||||| |||||||| |||| || |||| ||||||||||||| ||||    
T  27647969 gatccatgaattatttatcttaactatcaaattgatacttaatattgtcaaataaatgctaaa 27647907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 47304289 - 47304164
Alignment:
Q  1 tgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgat 100  Q
    ||||||||| || |||||| |||| ||||||||||||||   ||||||||||||||||||||||||||| ||||| |||| |||||||| ||||||||||    
T  47304289 tgaaagtcaata-aaattggtacattgtcaaatcgatcccataattattcattaaaaatcaagttggtccttgaattatgccactcactttcaaatcgat 47304191  T
Q  101 caatgaattatttatcttatctatcaa 127  Q
    |  ||||| ||||||||||| ||||||    
T  47304190 ccttgaatcatttatcttatatatcaa 47304164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 134
Target Start/End: Original strand, 20268273 - 20268406
Alignment:
Q  2 gaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatc 101  Q
    |||||||| |||||||||||||||| |||||| ||   | | ||||||  ||||||||||||||||| | |||| ||||||||||||| | |||||||||    
T  20268273 gaaagtcattacaaattgttacactttcaaattgacattcagattattggttaaaaatcaagttggttaatgaattatgtcactcactattaaatcgatc 20268372  T
Q  102 aatgaattatttatc-ttatctatcaaactgatc 134  Q
     || ||||||||||| ||||||||||| ||||||    
T  20268373 cataaattatttatctttatctatcaatctgatc 20268406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 5987922 - 5987790
Alignment:
Q  1 tgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgat 100  Q
    |||| |||| |||||||||||||| |||||||| ||||||||||||||| ||||||||||||| ||| |  |||| ||||| | |  || ||||| ||||    
T  5987922 tgaatgtcattacaaattgttacattgtcaaatagatccttaaattattaattaaaaatcaagatggaccctgaattatgttagtttctatcaaaccgat 5987823  T
Q  101 caatgaattatttatcttatctatcaaactgat 133  Q
    |  | ||||| || ||||| |||||||||||||    
T  5987822 ctttcaattaattttcttaactatcaaactgat 5987790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 30335168 - 30335085
Alignment:
Q  3 aaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactc 86  Q
    ||||||| ||||| ||||| || |||||||||||||| | ||||||||||||||||||||| |||||  || | ||||||||||    
T  30335168 aaagtcattacaatttgttgcattgtcaaatcgatccctgaattattcattaaaaatcaagatggtctctggattatgtcactc 30335085  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 30332334 - 30332450
Alignment:
Q  1 tgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgat 100  Q
    ||||||||| | |||||||||||| ||||||||| || | ||| ||||||||||||||||||| ||||   |||| ||||||| ||| |||||||  |||    
T  30332334 tgaaagtcattgcaaattgttacattgtcaaatcaattcctaatttattcattaaaaatcaagatggttcctgaattatgtcattca-tgtcaaaatgat 30332432  T
Q  101 caatgaattatttatctt 118  Q
    |  | |||||||||||||    
T  30332433 ctttaaattatttatctt 30332450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 20268909 - 20268868
Alignment:
Q  86 cactgtcaaatcgatcaatgaattatttatcttatctatcaa 127  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  20268909 cactgtcaaatcgatccttgaattatttatcttatctatcaa 20268868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 20268921 - 20268883
Alignment:
Q  11 tacaaattgttacactgtcaaatcgatccttaaattatt 49  Q
    |||||||||| |||||||||||||||||||| |||||||    
T  20268921 tacaaattgtcacactgtcaaatcgatccttgaattatt 20268883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 12659284 - 12659149
Alignment:
Q  1 tgaaagtcactacaaattgttacactgtcaaatcgatccttaaa--ttattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcg 98  Q
    ||||||||| |||||||||||||| |||||||| ||||  ||||  ||||||| ||||||||||| ||||| ||||| |||||| ||| || |||||||     
T  12659284 tgaaagtcattacaaattgttacattgtcaaattgatcaataaaaattattcactaaaaatcaagatggtccttgaattatgtctctccctatcaaatca 12659185  T
Q  99 atcaatgaattatttatcttatctatcaaactgatc 134  Q
    |||  |||||||||||||||| |||||||| |||||    
T  12659184 atctctgaattatttatcttaactatcaaattgatc 12659149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 38518188 - 38518065
Alignment:
Q  11 tacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatcaatgaatta 110  Q
    |||||||||||||| |||||||| ||||| |||||||||||||||||   ||| ||||| ||||| |||||  | |||||||||||||||| |||||||     
T  38518188 tacaaattgttacattgtcaaattgatccctaaattattcattaaaacgtaagatggtccttgaattatgtatcacactgtcaaatcgatctatgaattg 38518089  T
Q  111 tttatcttatctatcaaactgatc 134  Q
    ||||||||| || ||||| |||||    
T  38518088 tttatcttaactgtcaaattgatc 38518065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 12664052 - 12664174
Alignment:
Q  11 tacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatcaatgaatta 110  Q
    |||| ||||||| | | ||||||| |||||| ||||||||||||||||| ||  ||||| ||||| |||||||| |||| | |||| |||| ||||||||    
T  12664052 tacatattgttatattatcaaatcaatccttgaattattcattaaaaattaaaatggtccttgaattatgtcacacactattaaattgatccatgaatta 12664151  T
Q  111 tttatcttatctatcaaactgat 133  Q
    ||||||||| |||||||| ||||    
T  12664152 tttatcttaactatcaaattgat 12664174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 12657808 - 12657944
Alignment:
Q  1 tgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaa----atatgtcactcactgtcaaat 96  Q
    ||||||| | |||||||| ||| | ||||||||| |||| |  |||||||||||||| ||||| | ||| |||||    |||||||||||||| ||||||    
T  12657808 tgaaagtaattacaaattattatattgtcaaatcaatccctggattattcattaaaa-tcaagattgtccttgaattatatatgtcactcactatcaaat 12657906  T
Q  97 cgatcaatgaattatttatcttatctatcaaactgatc 134  Q
    |||||  |||||||||||||||| |||||||| |||||    
T  12657907 cgatccctgaattatttatcttaactatcaaattgatc 12657944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 12664472 - 12664410
Alignment:
Q  1 tgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaag 63  Q
    ||||| ||| |||||||| ||||| ||||| |||||||||| |||||||||||||||||||||    
T  12664472 tgaaattcattacaaattattacattgtcacatcgatccttgaattattcattaaaaatcaag 12664410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 153
Target Start/End: Complemental strand, 49539874 - 49539803
Alignment:
Q  83 actcactgtcaaatcgatcaatgaattatttatcttatctatcaaactgatctc-aataatgtcaaataaat 153  Q
    ||||| |||||||||| ||  |||||||||||| |||||||||||||||||||| |||| | ||||||||||    
T  49539874 actcattgtcaaatcgctccttgaattatttatattatctatcaaactgatctctaatactatcaaataaat 49539803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 6334343 - 6334229
Alignment:
Q  11 tacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatcaatgaatta 110  Q
    |||||||||||||  | |||||||||||  ||||||||  |||||  || ||| || || ||||| ||||||||||||| | ||||| |||| | |||||    
T  6334343 tacaaattgttacgttatcaaatcgatctctaaattatctattaatgattaagatgatccttgaattatgtcactcactattaaatcaatcacttaatta 6334244  T
Q  111 tttatcttatctatc 125  Q
    ||||| ||| |||||    
T  6334243 tttattttaactatc 6334229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 143 - 241
Target Start/End: Complemental strand, 62913 - 62815
Alignment:
Q  143 gtcaaataaatgttaaatactaaacgaatgtgaagaatccccaaggaacaagtgaggaataatagttaaacattattgtttcaacacctcctaataaat 241  Q
    ||||||||||||||||| |||||| |||||| |||||||||| || ||||||| | |||||| ||||||||||||||||||||| ||||| | ||||||    
T  62913 gtcaaataaatgttaaaaactaaaagaatgtaaagaatccccgagaaacaagttaagaataacagttaaacattattgtttcaatacctcatgataaat 62815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 63053 - 63006
Alignment:
Q  1 tgaaagtcactacaaattgttacactgtcaaatcgatccttaaattat 48  Q
    ||||||||| ||||||||||||||||||||||| ||||| || |||||    
T  63053 tgaaagtcattacaaattgttacactgtcaaattgatccctatattat 63006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 14815303 - 14815450
Alignment:
Q  11 tacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatcaatgaatta 110  Q
    |||||||||||| | |||||||| ||||  | |||||||||| |||||||||| |||||  |||  ||||||||||||| ||||||||| || | ||| |    
T  14815303 tacaaattgttatattgtcaaattgatctatgaattattcatgaaaaatcaagatggtc--tgagttatgtcactcactatcaaatcgaccattcaataa 14815400  T
Q  111 tttatcttatctatcaaactgat-ctcaataatgtcaaataaatgttaaa 159  Q
    ||||||| | |||||||||| || ||  ||||||||||||||||| ||||    
T  14815401 tttatctcaactatcaaactaatccttgataatgtcaaataaatgctaaa 14815450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 134
Target Start/End: Original strand, 26510973 - 26511075
Alignment:
Q  32 atcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatcaatgaattatttatcttatctatcaaactg 131  Q
    |||||||| | ||||||||||||||||||||| |||||  |||| ||||| | ||||| |||||||||||  | ||||||||||||||  ||| ||||||    
T  26510973 atcgatccctgaattattcattaaaaatcaagatggtccatgaattatgttattcactatcaaatcgatccctaaattatttatcttaattattaaactg 26511072  T
Q  132 atc 134  Q
    |||    
T  26511073 atc 26511075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 26511806 - 26511693
Alignment:
Q  2 gaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatc 101  Q
    |||||||| ||||||| | |||| |||||||| ||||    ||||||||||||||||| ||| |||||  |||| |||||||| |||  ||||||| |||    
T  26511806 gaaagtcattacaaatcgctacattgtcaaattgatctccgaattattcattaaaaattaagatggtctctgaattatgtcacccaccatcaaatcaatc 26511707  T
Q  102 aatgaattatttat 115  Q
      ||||||||||||    
T  26511706 tctgaattatttat 26511693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 3427 - 3591
Alignment:
Q  1 tgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgat 100  Q
    ||||||||| |||||||||||||| |||||||| ||||  | ||||||||||||||||| ||||||||  || || ||||||| ||||   |||||||||    
T  3427 tgaaagtcaatacaaattgttacattgtcaaattgatctctgaattattcattaaaaataaagttggttcttaaattatgtcattcaccaccaaatcgat 3526  T
Q  101 caatgaattatttatcttatctatcaaactgatc-tcaataatgtcaaataaatgttaaatactaa 165  Q
    |  | |||||||| | |||| ||||||  ||||| |  ||| ||||||||||||| |||| |||||    
T  3527 ccctaaattattt-ttttatatatcaatttgatcattgatactgtcaaataaatggtaaaaactaa 3591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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