View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7113_high_56 (Length: 232)

Name: NF7113_high_56
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7113_high_56
NF7113_high_56
[»] chr5 (13 HSPs)
chr5 (45-213)||(37411998-37412165)
chr5 (50-211)||(37430065-37430226)
chr5 (68-211)||(37595656-37595799)
chr5 (68-211)||(37825221-37825364)
chr5 (68-211)||(37437027-37437170)
chr5 (68-211)||(37534432-37534575)
chr5 (68-211)||(37712950-37713093)
chr5 (68-211)||(37641204-37641347)
chr5 (59-211)||(37381020-37381172)
chr5 (68-211)||(37703994-37704137)
chr5 (68-179)||(37698119-37698230)
chr5 (58-211)||(37399512-37399665)
chr5 (58-211)||(37391646-37391799)
[»] chr4 (2 HSPs)
chr4 (58-175)||(16841597-16841714)
chr4 (68-179)||(24216460-24216571)
[»] chr3 (1 HSPs)
chr3 (58-167)||(14554348-14554457)


Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 45 - 213
Target Start/End: Complemental strand, 37412165 - 37411998
Alignment:
Q  45 atcatcatgcaccgaagacccgaaaaaatcattaaaagccaagttgagtcgttgaaggtgtttaagttggaagatagtgctattgagatgtaattcacct 144  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37412165 atcatcatgcaccgaagacctgaaaaaatcattaaaagcca-gttgagtcgttgaaggtgtttaagtttgaagatagtgctattgagatgtaattcacct 37412067  T
Q  145 ttaagattgttgcacctaaggtccaaaccaatcacatgatccaaaacggtgtcgcacatgacaccatac 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37412066 ttaagattgttgcacctaaggtccaaaccaatcacatgatccaaaacggtgtcgcacatgacaccatac 37411998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 50 - 211
Target Start/End: Original strand, 37430065 - 37430226
Alignment:
Q  50 catgcaccgaagacccgaaaaaatcattaaaagccaagttgagtcgttgaaggtgtttaagttggaagatagtgctattgagatgtaattcacctttaag 149  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||     ||||||||| || ||    
T  37430065 catgcaccgaagacccgaaaaaatcattaaaagccaagttgagttgttgaaggtgtttaagttgaaagatggtgctattggccgctaattcaccgttcag 37430164  T
Q  150 attgttgcacctaaggtccaaaccaatcacatgatccaaaacggtgtcgcacatgacaccat 211  Q
    ||||||||| |||||||||| ||||||||||| |||  | | | |||||||| |||||||||    
T  37430165 attgttgcaactaaggtccagaccaatcacataatcgtacatgatgtcgcacgtgacaccat 37430226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 68 - 211
Target Start/End: Original strand, 37595656 - 37595799
Alignment:
Q  68 aaaaatcattaaaagccaagttgagtcgttgaaggtgtttaagttggaagatagtgctattgagatgtaattcacctttaagattgttgcacctaaggtc 167  Q
    |||||| ||||||||||||||||||| |||||||||||||||| || ||||| ||||||||| |||||||||||||||||||||||||||| || |||||    
T  37595656 aaaaattattaaaagccaagttgagttgttgaaggtgtttaagctgaaagatggtgctattgggatgtaattcacctttaagattgttgcaactgaggtc 37595755  T
Q  168 caaaccaatcacatgatccaaaacggtgtcgcacatgacaccat 211  Q
    || ||||||||| |||||  | | |||||||||| |||||||||    
T  37595756 cagaccaatcacgtgatctgacatggtgtcgcacgtgacaccat 37595799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 68 - 211
Target Start/End: Original strand, 37825221 - 37825364
Alignment:
Q  68 aaaaatcattaaaagccaagttgagtcgttgaaggtgtttaagttggaagatagtgctattgagatgtaattcacctttaagattgttgcacctaaggtc 167  Q
    |||||||||||||||||||||||||| |||||||||||||||| || ||||| ||||||||| |||||||||||||||| ||||||||||| || |||||    
T  37825221 aaaaatcattaaaagccaagttgagttgttgaaggtgtttaagctgaaagatggtgctattgggatgtaattcaccttttagattgttgcaactgaggtc 37825320  T
Q  168 caaaccaatcacatgatccaaaacggtgtcgcacatgacaccat 211  Q
    || ||||||||| |||||  | | |||||||||| |||||||||    
T  37825321 cagaccaatcacgtgatctgacatggtgtcgcacgtgacaccat 37825364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 68 - 211
Target Start/End: Original strand, 37437027 - 37437170
Alignment:
Q  68 aaaaatcattaaaagccaagttgagtcgttgaaggtgtttaagttggaagatagtgctattgagatgtaattcacctttaagattgttgcacctaaggtc 167  Q
    |||||| ||||||||||||||||||| |||||||||||||||| || ||||| ||||||||| |||||||||||||||| ||||||||||| || |||||    
T  37437027 aaaaatgattaaaagccaagttgagttgttgaaggtgtttaagctgaaagatggtgctattgggatgtaattcacctttcagattgttgcaactgaggtc 37437126  T
Q  168 caaaccaatcacatgatccaaaacggtgtcgcacatgacaccat 211  Q
    || ||||||||| |||||  | | |||||||||| |||||||||    
T  37437127 cagaccaatcacgtgatctgacatggtgtcgcacgtgacaccat 37437170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 68 - 211
Target Start/End: Original strand, 37534432 - 37534575
Alignment:
Q  68 aaaaatcattaaaagccaagttgagtcgttgaaggtgtttaagttggaagatagtgctattgagatgtaattcacctttaagattgttgcacctaaggtc 167  Q
    |||||| ||||||||||||||||||| |||||||||||||||| || ||||| ||||||||| |||||||||||||||| ||||||||||| || |||||    
T  37534432 aaaaatgattaaaagccaagttgagttgttgaaggtgtttaagctgaaagatggtgctattgggatgtaattcaccttttagattgttgcaactgaggtc 37534531  T
Q  168 caaaccaatcacatgatccaaaacggtgtcgcacatgacaccat 211  Q
    || ||||||||| |||||  | | |||||||||| |||||||||    
T  37534532 cagaccaatcacgtgatctgacatggtgtcgcacgtgacaccat 37534575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 68 - 211
Target Start/End: Original strand, 37712950 - 37713093
Alignment:
Q  68 aaaaatcattaaaagccaagttgagtcgttgaaggtgtttaagttggaagatagtgctattgagatgtaattcacctttaagattgttgcacctaaggtc 167  Q
    |||||| ||||||||||||||||||| |||||||||||||||| || ||||| ||||||||| |||||||||||||||| ||||||||||| || |||||    
T  37712950 aaaaatgattaaaagccaagttgagttgttgaaggtgtttaagctgaaagatggtgctattgggatgtaattcaccttttagattgttgcaactgaggtc 37713049  T
Q  168 caaaccaatcacatgatccaaaacggtgtcgcacatgacaccat 211  Q
    || ||||||||| |||||  | | |||||||||| |||||||||    
T  37713050 cagaccaatcacgtgatctgacatggtgtcgcacgtgacaccat 37713093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 68 - 211
Target Start/End: Original strand, 37641204 - 37641347
Alignment:
Q  68 aaaaatcattaaaagccaagttgagtcgttgaaggtgtttaagttggaagatagtgctattgagatgtaattcacctttaagattgttgcacctaaggtc 167  Q
    |||||| ||||||||||||||||||| | |||||||||||||| || ||||| ||||||||| |||||||||||||||| ||||||||||| || |||||    
T  37641204 aaaaattattaaaagccaagttgagttggtgaaggtgtttaagctgaaagatggtgctattgggatgtaattcaccttttagattgttgcaactgaggtc 37641303  T
Q  168 caaaccaatcacatgatccaaaacggtgtcgcacatgacaccat 211  Q
    || ||||||||| |||||  | | |||||||||| |||||||||    
T  37641304 cagaccaatcacgtgatctgacatggtgtcgcacgtgacaccat 37641347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 59 - 211
Target Start/End: Complemental strand, 37381172 - 37381020
Alignment:
Q  59 aagacccgaaaaaatcattaaaagccaagttgagtcgttgaaggtgtttaagttggaagatagtgctattgagatgtaattcacctttaagattgttgca 158  Q
    |||||||  |||||| ||||||||||||||||||| ||||||||||| |||| |||||||| ||||||||| ||||||||||||| || |||||| ||||    
T  37381172 aagacccagaaaaattattaaaagccaagttgagttgttgaaggtgtctaagctggaagattgtgctattgggatgtaattcaccattcagattgctgca 37381073  T
Q  159 cctaaggtccaaaccaatcacatgatccaaaacggtgtcgcacatgacaccat 211  Q
     || ||||||| |||||||||||||||  | | || ||||||| |||||||||    
T  37381072 actgaggtccagaccaatcacatgatctgacatggagtcgcacgtgacaccat 37381020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 211
Target Start/End: Original strand, 37703994 - 37704137
Alignment:
Q  68 aaaaatcattaaaagccaagttgagtcgttgaaggtgtttaagttggaagatagtgctattgagatgtaattcacctttaagattgttgcacctaaggtc 167  Q
    |||||| ||||||||||||||||||| ||||||||||| |||| | | |||| ||||||||  | |||||||||||||| ||||||||||| || || ||    
T  37703994 aaaaatgattaaaagccaagttgagttgttgaaggtgtctaagcttgtagattgtgctattaggttgtaattcacctttcagattgttgcaactgagatc 37704093  T
Q  168 caaaccaatcacatgatccaaaacggtgtcgcacatgacaccat 211  Q
    |||||||||||| |||||  | |||||||||||| |||||||||    
T  37704094 caaaccaatcacgtgatcagacacggtgtcgcacgtgacaccat 37704137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 68 - 179
Target Start/End: Original strand, 37698119 - 37698230
Alignment:
Q  68 aaaaatcattaaaagccaagttgagtcgttgaaggtgtttaagttggaagatagtgctattgagatgtaattcacctttaagattgttgcacctaaggtc 167  Q
    |||||| |||||||||||| || ||| |||||||| || |||| |||||||||||||||||| |||||||||||||||| | ||||||||| || |||||    
T  37698119 aaaaattattaaaagccaaattaagttgttgaaggcgtctaagctggaagatagtgctattgggatgtaattcacctttcaaattgttgcaactgaggtc 37698218  T
Q  168 caaaccaatcac 179  Q
    ||||||||||||    
T  37698219 caaaccaatcac 37698230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 58 - 211
Target Start/End: Complemental strand, 37399665 - 37399512
Alignment:
Q  58 gaagacccgaaaaaatcattaaaagccaagttgagtcgttgaaggtgtttaagttggaagatagtgctattgagatgtaattcacctttaagattgttgc 157  Q
    ||||||||  |||||| |||||||||||| || ||| ||||||||||| |||| || |||||  |||||||| |||||||||||||||| || |||||||    
T  37399665 gaagacccagaaaaattattaaaagccaaattaagttgttgaaggtgtctaagctgaaagatgatgctattgggatgtaattcaccttttagtttgttgc 37399566  T
Q  158 acctaaggtccaaaccaatcacatgatccaaaacggtgtcgcacatgacaccat 211  Q
    | || ||||||| ||||||||| |||||  | | |||||||||| |||||||||    
T  37399565 aactgaggtccagaccaatcacgtgatctgacatggtgtcgcacgtgacaccat 37399512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 58 - 211
Target Start/End: Complemental strand, 37391799 - 37391646
Alignment:
Q  58 gaagacccgaaaaaatcattaaaagccaagttgagtcgttgaaggtgtttaagttggaagatagtgctattgagatgtaattcacctttaagattgttgc 157  Q
    |||||||| ||||||  ||| |||| |||||||||| ||||||||||| |||| || ||||||||||||||| ||||||| ||||| || | ||||||||    
T  37391799 gaagacccaaaaaaaaaatttaaagacaagttgagttgttgaaggtgtctaagctgaaagatagtgctattgggatgtaaatcaccattcaaattgttgc 37391700  T
Q  158 acctaaggtccaaaccaatcacatgatccaaaacggtgtcgcacatgacaccat 211  Q
    | || ||||| |   ||||||| |||||  | | |||||||||| |||||||||    
T  37391699 aactgaggtctagttcaatcacgtgatctgacatggtgtcgcacgtgacaccat 37391646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 58 - 175
Target Start/End: Complemental strand, 16841714 - 16841597
Alignment:
Q  58 gaagacccgaaaaaatcattaaaagccaagttgagtcgttgaaggtgtttaagttggaagatagtgctattgagatgtaattcacctttaagattgttgc 157  Q
    ||||||||  |||||| ||||||||||||||||||| ||||||||||| | |  |||| ||||||||||||| |||||||||||||||| | ||||||||    
T  16841714 gaagacccagaaaaattattaaaagccaagttgagttgttgaaggtgtcttaactggaggatagtgctattgggatgtaattcacctttcaaattgttgc 16841615  T
Q  158 acctaaggtccaaaccaa 175  Q
    | || |||||||||||||    
T  16841614 aactgaggtccaaaccaa 16841597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 24216571 - 24216460
Alignment:
Q  68 aaaaatcattaaaagccaagttgagtcgttgaaggtgtttaagttggaagatagtgctattgagatgtaattcacctttaagattgttgcacctaaggtc 167  Q
    |||||| |||||| |||||||||||| ||||||||||| |||| | ||||||||||| |||  ||||||| |||||||| ||||||||||| ||||||||    
T  24216571 aaaaattattaaaggccaagttgagttgttgaaggtgtctaagcttgaagatagtgcaatttggatgtaactcacctttcagattgttgcaactaaggtc 24216472  T
Q  168 caaaccaatcac 179  Q
    || |||||||||    
T  24216471 cagaccaatcac 24216460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 167
Target Start/End: Original strand, 14554348 - 14554457
Alignment:
Q  58 gaagacccgaaaaaatcattaaaagccaagttgagtcgttgaaggtgtttaagttggaagatagtgctattgagatgtaattcacctttaagattgttgc 157  Q
    |||||||| |||| |||||||||||| | ||||||| ||||||||||| |||| |||||||||||||||||  ||||||||||||| || | ||||||||    
T  14554348 gaagacccaaaaatatcattaaaagctaggttgagttgttgaaggtgtctaagctggaagatagtgctattaggatgtaattcaccattcaaattgttgc 14554447  T
Q  158 acctaaggtc 167  Q
    | ||||||||    
T  14554448 aactaaggtc 14554457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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