View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7113_low_10 (Length: 508)
Name: NF7113_low_10
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7113_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 56 - 317
Target Start/End: Complemental strand, 30652524 - 30652265
Alignment:
| Q |
56 |
cctcatcaaagagctaagtacaaacggttacacatttccaaaatccaaatgactacttccttgattttcttctgctttcttctctccgtctctgtcacag |
155 |
Q |
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| T |
30652524 |
cctcatcaaagagctaagcacaaacggttacacatttccaaaatccaaatgactacttccttgattttcttctgctttcttctctccgtctctgtcacag |
30652425 |
T |
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| Q |
156 |
ccacaggtactcttccagctactctccacnnnnnnnnatgcacatatatatattctttgaaacactgaacatgacactgacacgtaaacacgagtaataa |
255 |
Q |
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| T |
30652424 |
ccacaggtactcttctagctactcttcacttttttttatgcac--atatatattctttgaaacagtgaaaatgacactgacacgtaaacactactgataa |
30652327 |
T |
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| Q |
256 |
cagtttgaaaaacataagtgatttaataagattgtttttgaattaggcatcgtttcatctta |
317 |
Q |
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| T |
30652326 |
cagtttgaaaaacataagtgatttaataagattgtttttgaatcaggcatcgtttcatctta |
30652265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 314 - 489
Target Start/End: Complemental strand, 30652217 - 30652042
Alignment:
| Q |
314 |
cttaggttatttgtgttaataatattaggtgttgttaaggatggaaacgggacacaactcatactcgtaaacaactgcaaggaaagtgtatggccaggaa |
413 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30652217 |
cttatgttatttgtgttaataatattaggtgttgttaaggatggaaacgggacacaactcatactcgtaaacaactgcaaggaaagtgtatggccaggaa |
30652118 |
T |
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| Q |
414 |
ttctcagcaatgaaggacacccttcaatcaaagatggtggatttcacctcccaagcggcgaagaacttgttctcca |
489 |
Q |
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| T |
30652117 |
ttctcagcaatgaaggacacccttcaatcaaagatggcggatttcacctcccaagcggcgaagaacttgttctcca |
30652042 |
T |
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