View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7113_low_11 (Length: 500)

Name: NF7113_low_11
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7113_low_11
NF7113_low_11
[»] chr4 (2 HSPs)
chr4 (89-485)||(47900537-47900933)
chr4 (297-483)||(23554415-23554613)
[»] scaffold0727 (1 HSPs)
scaffold0727 (297-483)||(6536-6734)


Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 89 - 485
Target Start/End: Complemental strand, 47900933 - 47900537
Alignment:
Q  89 gattcgaatcttccgtttagaacattccatcacaagtaacaatctaacggttcaaaatccaactaagcttcaacaaaaattccatagcattattccagca 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  47900933 gattcgaatcttccgtttagaacattccatcacaagtaacaatctaacggttcaaaatccaactaagcttcaacaaaaattccatagcataattccagca 47900834  T
Q  189 tcaccacaacattaaaacaaacgttgttcttgttaacttcttctctctaattcttcctcgtatttcgacaacacttccacaccaatcannnnnnncacct 288  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  47900833 tcaccacaacattaaaacaaacgttgttcttgctaacttcttctctctaattcttcctcgtatttcgacaacacttccacaccaatcatttttttcacct 47900734  T
Q  289 ctctctgccggagaaaccttgttccggtggtggcgggaacgaggtttgtttgaccgttaggtgtgtccacatggaggtttcatacgtgtcaccggaaagc 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47900733 ctctctgccggagaaaccttgttccggtggtggcgggaacgaggtttgtttgaccgttaggtgtgtccacatggaggtttcatacgtgtcaccggaaagc 47900634  T
Q  389 tctaaggttgtgtcaccaagaacactaagaaagtctatagtggaaaaagtgtttggaaaatcgtattccattaaaggcagtggaagcttcaagaaac 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47900633 tctaaggttgtgtcaccaagaacactaagaaagtctatagtggaaaaagtgtttggaaaatcgtattccattaaaggcagtggaagcttcaagaaac 47900537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 297 - 483
Target Start/End: Original strand, 23554415 - 23554613
Alignment:
Q  297 cggagaaaccttgttccggtggtggcgggaacgaggtttgtttgaccgttaggtgtgtccac------------atggaggtttcatacgtgtcaccgga 384  Q
    |||||||| ||||||||| ||||||||| ||| ||||||||||||| |||||||||||||||            |||||||||||||| ||  |||  ||    
T  23554415 cggagaaatcttgttccgatggtggcggcaacaaggtttgtttgactgttaggtgtgtccactttttcggacacatggaggtttcatatgttacacgaga 23554514  T
Q  385 aagctctaaggttgtgtcaccaagaacactaagaaagtctatagtggaaaaagtgtttggaaaatcgtattccattaaaggcagtggaagcttcaagaa 483  Q
    ||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||    
T  23554515 aagctctaaggttgtatcaccaagaacaccaagtaagtctatagtggaaaaagtgtttggaaaatcgtatttcattagagggagtggaagcttcaagaa 23554613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0727 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0727
Description:

Target: scaffold0727; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 297 - 483
Target Start/End: Original strand, 6536 - 6734
Alignment:
Q  297 cggagaaaccttgttccggtggtggcgggaacgaggtttgtttgaccgttaggtgtgtccac------------atggaggtttcatacgtgtcaccgga 384  Q
    |||||||| ||||||||| ||||||||| ||| ||||||||||||| |||||||||||||||            |||||||||||||| ||  |||  ||    
T  6536 cggagaaatcttgttccgatggtggcggcaacaaggtttgtttgactgttaggtgtgtccactttttcggacacatggaggtttcatatgttacacgaga 6635  T
Q  385 aagctctaaggttgtgtcaccaagaacactaagaaagtctatagtggaaaaagtgtttggaaaatcgtattccattaaaggcagtggaagcttcaagaa 483  Q
    ||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||    
T  6636 aagctctaaggttgtatcaccaagaacaccaagtaagtctatagtggaaaaagtgtttggaaaatcgtatttcattagagggagtggaagcttcaagaa 6734  T

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