View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7113_low_12 (Length: 499)
Name: NF7113_low_12
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7113_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 68 - 481
Target Start/End: Original strand, 51704879 - 51705287
Alignment:
| Q |
68 |
gtcgattgttagatcaaacgt-gtgattgaagttcgaattctcatttacaattaaaaagaattagctacaatgtcacctccacgtacttnnnnnnnnnnn |
166 |
Q |
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| T |
51704879 |
gtcgattgttagatcgaactttgtgattggagttcgaattctcattcacaattaaaaagaattagctataatgtcacctccacgtact------ctctct |
51704972 |
T |
|
| Q |
167 |
nnncgactatatatatacacctccctcaatatagacacacaagcaagttaattgagtgtatgaagaaaaatgagtcacgttgaaagtggagcgaagttat |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
51704973 |
ctccgactatatatatacacctccctcaatatagacacacaagcaagttaattgagtgtatgaagaaaaatgagtcaagttgaaactggagcgaagttat |
51705072 |
T |
|
| Q |
267 |
tggctacactagcacttgctctctttcatcttcttccagtaaaccctacattgtccgaatttaaccgtcaccgtgaaattacattgttagaggaacactt |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51705073 |
tggctacactagcacttgctctctttcatcttcttccagtaacccctacattgtccgaatttaaccgtcaccgtgaaattacattgttagaggaacactt |
51705172 |
T |
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| Q |
367 |
aactgctgcggaaaccactgttagagtggtcagagttcggaaagacggaaccggagattttacgacggtgacggatgccgttaaaagcattccgtcagga |
466 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51705173 |
aactgctgcggaaaccaccgttagagtggtcagagttcggaaagacggaaccggagattttacgacggtgacggatgccgttaaaagcattccgtcagga |
51705272 |
T |
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| Q |
467 |
aacaaaaggagagtg |
481 |
Q |
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| T |
51705273 |
aacaaaaggagagtg |
51705287 |
T |
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