View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7113_low_14 (Length: 491)

Name: NF7113_low_14
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7113_low_14
NF7113_low_14
[»] chr8 (11 HSPs)
chr8 (215-484)||(25246940-25247210)
chr8 (244-482)||(33828148-33828389)
chr8 (297-421)||(29191136-29191261)
chr8 (299-422)||(16366830-16366954)
chr8 (241-461)||(41877355-41877578)
chr8 (322-484)||(42664126-42664290)
chr8 (314-441)||(10207973-10208094)
chr8 (338-435)||(5697319-5697417)
chr8 (336-435)||(5676399-5676499)
chr8 (301-400)||(26534376-26534476)
chr8 (231-267)||(29191291-29191327)
[»] chr2 (13 HSPs)
chr2 (1-217)||(11839992-11840201)
chr2 (221-480)||(45040055-45040318)
chr2 (302-440)||(43559627-43559765)
chr2 (241-482)||(19865808-19866052)
chr2 (241-482)||(19870709-19870953)
chr2 (241-482)||(19875610-19875854)
chr2 (303-482)||(18061103-18061285)
chr2 (305-436)||(29686162-29686294)
chr2 (384-483)||(33226606-33226707)
chr2 (241-360)||(5608426-5608545)
chr2 (380-421)||(5608580-5608621)
chr2 (302-374)||(33226767-33226840)
chr2 (414-482)||(21017197-21017267)
[»] chr7 (7 HSPs)
chr7 (299-484)||(47235870-47236055)
chr7 (218-434)||(19910016-19910229)
chr7 (218-299)||(47235759-47235841)
chr7 (245-484)||(6036700-6036944)
chr7 (294-415)||(34821131-34821253)
chr7 (261-421)||(27705385-27705544)
chr7 (110-159)||(28117231-28117280)
[»] chr4 (11 HSPs)
chr4 (244-482)||(1101062-1101303)
chr4 (303-433)||(55250445-55250576)
chr4 (241-435)||(47668932-47669129)
chr4 (306-441)||(1838565-1838701)
chr4 (332-484)||(20447741-20447895)
chr4 (241-431)||(20991334-20991523)
chr4 (316-436)||(29857426-29857547)
chr4 (305-422)||(35466411-35466530)
chr4 (359-439)||(46964013-46964093)
chr4 (296-366)||(46963758-46963827)
chr4 (294-363)||(34028097-34028165)
[»] scaffold0406 (1 HSPs)
scaffold0406 (227-461)||(12650-12885)
[»] chr1 (6 HSPs)
chr1 (218-484)||(7093437-7093709)
chr1 (295-461)||(44508219-44508386)
chr1 (297-440)||(15962297-15962441)
chr1 (242-482)||(31067062-31067306)
chr1 (118-159)||(15826455-15826496)
chr1 (391-484)||(41335963-41336058)
[»] chr3 (9 HSPs)
chr3 (307-435)||(39650412-39650541)
chr3 (241-420)||(45483804-45483987)
chr3 (241-461)||(33087866-33088086)
chr3 (297-421)||(26445913-26446037)
chr3 (312-482)||(46091784-46091958)
chr3 (312-421)||(570950-571062)
chr3 (340-433)||(28521495-28521589)
chr3 (314-483)||(28146763-28146938)
chr3 (383-483)||(28050706-28050808)
[»] chr5 (5 HSPs)
chr5 (241-440)||(29790508-29790706)
chr5 (297-421)||(35951967-35952092)
chr5 (216-461)||(15471076-15471322)
chr5 (299-482)||(14144862-14145051)
chr5 (297-440)||(33140327-33140469)
[»] scaffold0258 (1 HSPs)
scaffold0258 (241-433)||(18108-18302)
[»] scaffold0005 (1 HSPs)
scaffold0005 (241-482)||(270176-270420)
[»] scaffold0257 (1 HSPs)
scaffold0257 (294-433)||(16484-16625)
[»] chr6 (4 HSPs)
chr6 (296-461)||(4017039-4017205)
chr6 (229-440)||(13325535-13325747)
chr6 (386-422)||(20921404-20921440)
chr6 (241-270)||(20921257-20921286)


Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 215 - 484
Target Start/End: Complemental strand, 25247210 - 25246940
Alignment:
Q  215 atccaggggcggagggcttcatagggatggggtagcattggctaccccaaaagaaa-taaattcttgaataacaagtctaagttttatatatagctaccc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  25247210 atccaggggcggagggcttcatagggatggggtagcattggctaccccaaaagaaaataaattcttgaataacaagcctaagttttatatatagctaccc 25247111  T
Q  314 cattaatatattatttgcctactccaaacaattttgttgatttaaagagatattatattaacaaaaattgataatctatttagtttagtgtcaattatag 413  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25247110 cattaatatattatttggctactccaaacaattttgttgatttaaagagatattatattaacaaaaattgataatatatttagtttagtgtcaattatag 25247011  T
Q  414 ataaatttgtcttcttaaaactccatagcactcatcttttacaaataaatagttagcttttattttcttcg 484  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25247010 ataaatttgtcttcttaaaactccatagaactcatcttttacaaataaatagttagcttttattttcttcg 25246940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 244 - 482
Target Start/End: Original strand, 33828148 - 33828389
Alignment:
Q  244 gggtagcattggctaccccaaaaga-aataaattcttgaataacaagtctaagttttatatatagctaccccattaatatattatttgcctactccaaac 342  Q
    ||||||||||||||||||||||||| || ||| ||||||||||  |  || || | ||||| ||||||||||||||| ||||| |||| |||||||||||    
T  33828148 gggtagcattggctaccccaaaagagaaaaaaatcttgaataattaa-cttaggtatatatgtagctaccccattaagatattttttgactactccaaac 33828246  T
Q  343 aattttgttgatttaaagagatattatattaacaaaa-attgataatctatttagtttagtgtcaattatagataaatttgtcttcttaaaactccatag 441  Q
    |||||||||| || ||| | | || ||||||  |||| |||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||| |||    
T  33828247 aattttgttggttaaaataaagatgatattataaaaatattgataatctatttagtttagtgtcaattatggataaatttgacttctaaaaactccttag 33828346  T
Q  442 cactcatcttttacaaataa--atagttagcttttattttctt 482  Q
      |||| |||||| ||||||  || ||||||||||||||||||    
T  33828347 agctcaacttttataaataactattgttagcttttattttctt 33828389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 297 - 421
Target Start/End: Complemental strand, 29191261 - 29191136
Alignment:
Q  297 tttatatatagctaccccattaatatattatttgcctactccaaacaattttgttgatttaaagagatattatatt-aacaaaaattgataatctattta 395  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||| || |||||  ||||| ||||||| | ||||||    
T  29191261 tttatatgtagctactccattaatatattatttgcctactccaaacaattttgttggtttaaaaagagatgatattgcacaaatattgatagtatattta 29191162  T
Q  396 gtttagtgtcaattatagataaattt 421  Q
    |||| ||||||||||| |||||||||    
T  29191161 gtttggtgtcaattatggataaattt 29191136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 299 - 422
Target Start/End: Complemental strand, 16366954 - 16366830
Alignment:
Q  299 tatatatagctaccccattaatatattatttgcctactccaaacaattttgttgatttaaagagatattatattaacaaaa-attgataatctatttagt 397  Q
    ||||| || |||||||||||  || ||||||| ||||||||||||||||||||| || ||| ||| || ||||||  |||| ||||||||||||||||||    
T  16366954 tatatgtaactaccccattatgatgttatttgactactccaaacaattttgttggttaaaatagagatgatattataaaaatattgataatctatttagt 16366855  T
Q  398 ttagtgtcaattatagataaatttg 422  Q
    ||||||| |||||||||||||||||    
T  16366854 ttagtgttaattatagataaatttg 16366830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 241 - 461
Target Start/End: Original strand, 41877355 - 41877578
Alignment:
Q  241 atggggtagcattggctaccccaaaagaaataaatt--cttgaataacaagtctaagttttatatatagctaccccattaatatattatttgcctactcc 338  Q
    |||||||||||||||||||||||||||||| |||    |||||||||  | | || ||||| ||| |||||||||||||||||||||| ||| |||||||    
T  41877355 atggggtagcattggctaccccaaaagaaaaaaaaaagcttgaataattaatata-gttttgtatgtagctaccccattaatatattacttggctactcc 41877453  T
Q  339 aaacaattttgttgatttaaagagatattatattaacaaaa-attgataatctatttagtttagtgtcaa--ttatagataaatttgtcttcttaaaact 435  Q
    ||||||||||||||  ||||| ||| |  || |||| |||| ||| ||||| ||||||||||| ||||||   |||| ||||||||| ||||||||||||    
T  41877454 aaacaattttgttg-gttaaaaagagacgatcttaataaaatattaataatttatttagtttaatgtcaagtatatatataaatttgacttcttaaaact 41877552  T
Q  436 ccatagcactcatcttttacaaataa 461  Q
      |||  ||||| |||||| ||||||    
T  41877553 tgataaaactcaacttttataaataa 41877578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 322 - 484
Target Start/End: Complemental strand, 42664290 - 42664126
Alignment:
Q  322 tattatttgcctactccaaacaattttgttgatttaaagagatattatattaacaaaaattgataatctatttagtttagtgtcaattatagataaattt 421  Q
    ||||||||| | ||||||||||||||||||| |||||| ||   | || |||| ||| | | ||||||||||||||||||||||||||||| ||||||||    
T  42664290 tattatttggccactccaaacaattttgttggtttaaaaagtggtgattttaaaaaatacttataatctatttagtttagtgtcaattataaataaattt 42664191  T
Q  422 gtcttcttaaaactccatagcactcatcttttacaaataa--atagttagcttttattttcttcg 484  Q
    | ||| |||||||| |||||    || |||||| ||||||  || ||||| ||||||||||||||    
T  42664190 gactttttaaaacttcatagagtacaacttttataaataattattgttagattttattttcttcg 42664126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 314 - 441
Target Start/End: Complemental strand, 10208094 - 10207973
Alignment:
Q  314 cattaatatattatttgcctactccaaacaattttgttgatttaaagagatattatattaacaaaaattgataatctatttagtttagtgtcaattatag 413  Q
    |||| ||||||| |||| ||||||||||||||||||||| |||||||||| ||  |||||  ||| ||||||||| |||||||||| ||| |||||        
T  10208094 cattgatatattgtttgactactccaaacaattttgttggtttaaagagagatactatta--aaatattgataatttatttagttttgtgccaatt---- 10208001  T
Q  414 ataaatttgtcttcttaaaactccatag 441  Q
    ||||||||| |||||||||||| |||||    
T  10208000 ataaatttgacttcttaaaacttcatag 10207973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 435
Target Start/End: Complemental strand, 5697417 - 5697319
Alignment:
Q  338 caaacaattttgttgatttaaagagatattatattaacaaaaat-tgataatctatttagtttagtgtcaattatagataaatttgtcttcttaaaact 435  Q
    |||||||||||||| ||| |||||||||| ||||||  |||||| ||||||| |||||| | |||||||||||||| ||||||||| ||||||| ||||    
T  5697417 caaacaattttgtttattcaaagagatataatattataaaaaatatgataatttatttaatatagtgtcaattataaataaatttgacttcttacaact 5697319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 5676499 - 5676399
Alignment:
Q  336 tccaaacaattttgttgatttaaagagatattatattaacaaaaat-tgataatctatttagtttagtgtcaattatagataaatttgtcttcttaaaac 434  Q
    |||||||||||||||||||| ||||| |||| ||||||| |||||| ||||||| |||||| | ||| |||||||||||||||| ||   ||||||||||    
T  5676499 tccaaacaattttgttgattcaaagaaatataatattaaaaaaaatatgataatttatttaatatagagtcaattatagataaacttaagttcttaaaac 5676400  T
Q  435 t 435  Q
    |    
T  5676399 t 5676399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 400
Target Start/End: Original strand, 26534376 - 26534476
Alignment:
Q  301 tatatagctaccccattaatatattatttgcctactccaaacaattttgttgatttaaagagatattatatta-acaaaaattgataatctatttagttt 399  Q
    ||||||||||||||||||| ||||||||||   ||||||||||||||||||| || ||| ||| ||  ||||| | ||| ||||||||||||||||||||    
T  26534376 tatatagctaccccattaagatattatttggtcactccaaacaattttgttggttaaaatagagatggtattataaaaatattgataatctatttagttt 26534475  T
Q  400 a 400  Q
    |    
T  26534476 a 26534476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 29191327 - 29191291
Alignment:
Q  231 cttcatagggatggggtagcattggctaccccaaaag 267  Q
    ||||||||  |||||||||||||||||||||||||||    
T  29191327 cttcatagttatggggtagcattggctaccccaaaag 29191291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 11840201 - 11839992
Alignment:
Q  1 tttttatatagggatttgatcaatttacaccatgatgttaaacttaatatatgatatctctgatacttttttaccgtatatctgtatttacaatatccat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11840201 tttttatatagggatttgatcaatttacaccatgatgttaaacttaatatatgatatcactgatacttttttaccgtatatctgtatttacaatatccat 11840102  T
Q  101 caatggataatagatcatgtatataaaatttgacattaatctgaaataatttgatatgttgagatacatcaaacttaacatataaacttttatcaaatga 200  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11840101 caatggataatagatcatgtatataaaatttga-------ctgaaataatttgatatgttgagatacatcaaacttaacatataaacttttatcaaatga 11840009  T
Q  201 gtcaattttgatgtatc 217  Q
    |||||||||||||||||    
T  11840008 gtcaattttgatgtatc 11839992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 221 - 480
Target Start/End: Complemental strand, 45040318 - 45040055
Alignment:
Q  221 gggcggagggcttcatagggatggggtagcattggctaccccaaaagaaataaatt--cttgaataacaagtctaagttttatatatagctaccccatta 318  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||  ||||||||    ||||||| |  ||  ||| ||||||||| | |||||||||||    
T  45040318 gggcgaagggcttcaaagggatggggtagcattggctaccccaacggaaataaaaaaacttgaatgattagcataaattttatatacaactaccccatta 45040219  T
Q  319 atatattatttgcctactccaaacaattttgttgatttaaagagatattatattaacaaaaattgataatctatttagtttagtgtcaattatagataaa 418  Q
    |||||||||||    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  45040218 atatattatttagtcactccaaacaattttgttgtttcaaagagatattatattaacaaaaattgataatctatttagtttagtatcaattatagataaa 45040119  T
Q  419 tttgtcttcttaaaactccatagcactcatcttttacaaataa--atagttagcttttattttc 480  Q
    |||||||||||||||||||||||  ||||| ||||||||||||  || |||| |||||||||||    
T  45040118 tttgtcttcttaaaactccatagagctcatattttacaaataactattgttaccttttattttc 45040055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 302 - 440
Target Start/End: Original strand, 43559627 - 43559765
Alignment:
Q  302 atatagctaccccattaatatattatttgcctactccaaacaattttgttgatttaaagagatattatattaacaaaa-attgataatctatttagttta 400  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||| ||||| |||| |||| | | |||||||| ||||||||    
T  43559627 atatagctaccc-attaatatattatttggctactccaaacaattttgttggtttaaagagagattattttaaaaaaatacttataatctacttagttta 43559725  T
Q  401 gtgtcaattatagataaatttgtcttcttaaaactccata 440  Q
    |||||||||||| ||||||||| ||| |||||||| ||||    
T  43559726 gtgtcaattataaataaatttgacttgttaaaacttcata 43559765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 241 - 482
Target Start/End: Original strand, 19865808 - 19866052
Alignment:
Q  241 atggggtagcattggctaccccaaaagaaataaat--tcttgaataaca-agtctaagttttatatatagctaccccattaatatattatttgcctactc 337  Q
    ||||||||||||| |||||||||||||||| |||   ||||||||||   ||| || ||||| ||| ||||||||||||| |||||||||||| ||||||    
T  19865808 atggggtagcatttgctaccccaaaagaaaaaaaaaatcttgaataatgtagtata-gttttgtatgtagctaccccattgatatattatttggctactc 19865906  T
Q  338 caaacaa-ttttgttgatttaaagagatattatattaacaaaa-attgataatctatttagtttagtgtcaattatagataaatttgtcttcttaaaact 435  Q
    ||||||| |||||||| ||||||||   || |||| || |||| || |||||||||||||||||||| |||||||||||||||||||    |||||||||    
T  19865907 caaacaatttttgttggtttaaagaaggatgatatcaataaaatatagataatctatttagtttagtatcaattatagataaatttg---acttaaaact 19866003  T
Q  436 ccatagcactcatcttttacaaataa--atagttagcttttattttctt 482  Q
     |||||  | || |||||| ||||||  || ||||| ||||||||||||    
T  19866004 tcatagagcacaacttttataaataattattgttagattttattttctt 19866052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 241 - 482
Target Start/End: Original strand, 19870709 - 19870953
Alignment:
Q  241 atggggtagcattggctaccccaaaagaaataaat--tcttgaataaca-agtctaagttttatatatagctaccccattaatatattatttgcctactc 337  Q
    ||||||||||||| |||||||||||||||| |||   ||||||||||   ||| || ||||| ||| ||||||||||||| |||||||||||| ||||||    
T  19870709 atggggtagcatttgctaccccaaaagaaaaaaaaaatcttgaataatgtagtata-gttttgtatgtagctaccccattgatatattatttggctactc 19870807  T
Q  338 caaacaa-ttttgttgatttaaagagatattatattaacaaaa-attgataatctatttagtttagtgtcaattatagataaatttgtcttcttaaaact 435  Q
    ||||||| |||||||| ||||||||   || |||| || |||| || |||||||||||||||||||| |||||||||||||||||||    |||||||||    
T  19870808 caaacaatttttgttggtttaaagaaggatgatatcaataaaatatagataatctatttagtttagtatcaattatagataaatttg---acttaaaact 19870904  T
Q  436 ccatagcactcatcttttacaaataa--atagttagcttttattttctt 482  Q
     |||||  | || |||||| ||||||  || ||||| ||||||||||||    
T  19870905 tcatagagcacaacttttataaataattattgttagattttattttctt 19870953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 241 - 482
Target Start/End: Original strand, 19875610 - 19875854
Alignment:
Q  241 atggggtagcattggctaccccaaaagaaataaat--tcttgaataaca-agtctaagttttatatatagctaccccattaatatattatttgcctactc 337  Q
    ||||||||||||| |||||||||||||||| |||   ||||||||||   ||| || ||||| ||| ||||||||||||| |||||||||||| ||||||    
T  19875610 atggggtagcatttgctaccccaaaagaaaaaaaaaatcttgaataatgtagtata-gttttgtatgtagctaccccattgatatattatttggctactc 19875708  T
Q  338 caaacaa-ttttgttgatttaaagagatattatattaacaaaa-attgataatctatttagtttagtgtcaattatagataaatttgtcttcttaaaact 435  Q
    ||||||| |||||||| ||||||||   || |||| || |||| || |||||||||||||||||||| |||||||||||||||||||    |||||||||    
T  19875709 caaacaatttttgttggtttaaagaaggatgatatcaataaaatatagataatctatttagtttagtatcaattatagataaatttg---acttaaaact 19875805  T
Q  436 ccatagcactcatcttttacaaataa--atagttagcttttattttctt 482  Q
     |||||  | || |||||| ||||||  || ||||| ||||||||||||    
T  19875806 tcatagagcacaacttttataaataattattgttagattttattttctt 19875854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 303 - 482
Target Start/End: Complemental strand, 18061285 - 18061103
Alignment:
Q  303 tatagctaccccattaatatattatttgcctactccaaacaattttgttgatttaaagagatattatattaaca-aaaattgataatctatttagtttag 401  Q
    ||||||||||||||||||||||||||||  ||||||||||||||| |||| || ||||||| ||  |||||| | || ||| ||||||||||||||||||    
T  18061285 tatagctaccccattaatatattatttggttactccaaacaatttggttggttcaaagagagatgctattaaaataatattaataatctatttagtttag 18061186  T
Q  402 tgtcaattatagataaatttgtcttcttaaaactccatagcactcatcttttacaaataa--atagttagcttttattttctt 482  Q
    |||| |||||  ||||||||| ||||||||||||| |||   ||||  ||||| ||||||  || |||||||||| |||||||    
T  18061185 tgtccattatgaataaatttgacttcttaaaactctatatagctcaaattttataaataactattgttagcttttgttttctt 18061103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 305 - 436
Target Start/End: Complemental strand, 29686294 - 29686162
Alignment:
Q  305 tagctaccccattaatatattatttgcctactccaaacaattttgttgatttaaagagatattatattaacaaaa-attgataatctatttagtttagtg 403  Q
    ||||||||||||||| ||||||||||   ||| |||| |||||||||| || ||| ||| || ||| ||  |||| |||||||||||||||| |||||||    
T  29686294 tagctaccccattaagatattatttggtcacttcaaataattttgttggttaaaacagagatgatactataaaaatattgataatctatttattttagtg 29686195  T
Q  404 tcaattatagataaatttgtcttcttaaaactc 436  Q
    |||||||| |||||| ||| ||||| |||||||    
T  29686194 tcaattatggataaaattgacttctaaaaactc 29686162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 483
Target Start/End: Complemental strand, 33226707 - 33226606
Alignment:
Q  384 ataatctatttagtttagtgtcaattatagataaatttgtcttcttaaaactccatagcactcatcttttacaaataa--atagttagcttttattttct 481  Q
    ||||||||||||||||||||||||||||| ||||||||| ||| |||||||| |||||    || |||||| ||||||  || ||||| |||||||||||    
T  33226707 ataatctatttagtttagtgtcaattataaataaatttgacttgttaaaacttcatagagtacaacttttataaataattattgttagattttattttct 33226608  T
Q  482 tc 483  Q
    ||    
T  33226607 tc 33226606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 241 - 360
Target Start/End: Original strand, 5608426 - 5608545
Alignment:
Q  241 atggggtagcattggctaccccaaaagaa-ataaattcttgaataacaagtctaagttttatatatagctaccccattaatatattatttgcctactcca 339  Q
    ||||||||||||||||||||||||||||| | |||  |||||||||   || |||| || || |||||||| |||||||||||||||||||  ||| | |    
T  5608426 atggggtagcattggctaccccaaaagaagaaaaaaacttgaataattggtataagatt-atgtatagctaacccattaatatattatttggttacccta 5608524  T
Q  340 aacaattttgttgatttaaag 360  Q
    | ||||||||||| |||||||    
T  5608525 atcaattttgttggtttaaag 5608545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 421
Target Start/End: Original strand, 5608580 - 5608621
Alignment:
Q  380 attgataatctatttagtttagtgtcaattatagataaattt 421  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  5608580 attgataatatatttagtttagtgtcaattatagataaattt 5608621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 302 - 374
Target Start/End: Complemental strand, 33226840 - 33226767
Alignment:
Q  302 atatagctaccccattaatat-attatttgcctactccaaacaattttgttgatttaaagagatattatattaa 374  Q
    |||||||||||| |||||||| |||||||| ||||||||||||||||| | | |||||||||| ||||| ||||    
T  33226840 atatagctaccctattaatattattatttggctactccaaacaattttatcggtttaaagagagattattttaa 33226767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 482
Target Start/End: Complemental strand, 21017267 - 21017197
Alignment:
Q  414 ataaatttgtcttcttaaaactccatagcactcatcttttacaaataa--atagttagcttttattttctt 482  Q
    ||||||||| |||||||||||||||||   |||| |||||| ||||||  || ||||||||||||||||||    
T  21017267 ataaatttgacttcttaaaactccatatatctcaacttttataaataactattgttagcttttattttctt 21017197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 170; Significance: 5e-91; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 299 - 484
Target Start/End: Original strand, 47235870 - 47236055
Alignment:
Q  299 tatatatagctaccccattaatatattatttgcctactccaaacaattttgttgatttaaagagatattatattaacaaaaattgataatctatttagtt 398  Q
    ||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47235870 tatatatagctactccattaatatattatttggctattccaaacaattttgttgatttaaagagatattatattaacaaaaattgataatctatttagtt 47235969  T
Q  399 tagtgtcaattatagataaatttgtcttcttaaaactccatagcactcatcttttacaaataaatagttagcttttattttcttcg 484  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47235970 tagtgtcaattatagataaatttgtcttcttaaaactccatagaactcatcttttacaaataaatagttagcttttattttcttcg 47236055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 218 - 434
Target Start/End: Original strand, 19910016 - 19910229
Alignment:
Q  218 caggggcggagggcttcatagggatggggtagcattggctaccccaaaagaaataaattcttgaataacaagtctaagttttatatatagctaccccatt 317  Q
    |||||||| ||||||||| |   |||||||||||||||||||||||||||||| ||| |||||||||   |  || || | ||||  |||||||||||||    
T  19910016 caggggcgaagggcttcacaaccatggggtagcattggctaccccaaaagaaaaaaaatcttgaatatttaa-cttaggtatatacgtagctaccccatt 19910114  T
Q  318 aatatattatttgcctactccaaacaattttgttgatttaaagagatattatatta-acaaaaattgataatctatttagtttagtgtcaattatagata 416  Q
    || |||||||||| ||||||||||||||||||||| || ||| ||| || |||||| | ||| ||||||||||||||| |||||||||   |||| ||||    
T  19910115 aaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaatattgataatctattttgtttagtgt---ttatggata 19910211  T
Q  417 aatttgtcttcttaaaac 434  Q
    |||||| ||||| |||||    
T  19910212 aatttgacttctaaaaac 19910229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 218 - 299
Target Start/End: Original strand, 47235759 - 47235841
Alignment:
Q  218 caggggcggagggcttcatagggatggggtagcattggctaccccaaaag-aaataaattcttgaataacaagtctaagtttt 299  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||| ||||    
T  47235759 caggggtggagggcttcatagggatggggtagaattggctaccccaaaagaaaataaattcttgaataacaagcctaattttt 47235841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 245 - 484
Target Start/End: Original strand, 6036700 - 6036944
Alignment:
Q  245 ggtagcattggctaccccaaaa--gaaataaattcttgaataacaagtctaagttttatatatagctaccccattaatatattatttgcctactccaaac 342  Q
    ||||||||||||||||||||||  |||| |||  |||||||||  | | || ||||||||| |||||||||||||||  ||||||| | |||||||||||    
T  6036700 ggtagcattggctaccccaaaaaagaaaaaaaaacttgaataatcaatgta-gttttatatgtagctaccccattaaattattattcggctactccaaac 6036798  T
Q  343 aattttgttgatttaaagagatattatatta-acaaaaattgataatctatttagtttagtgtcaattatagataaatttgtcttcttaaaactccatag 441  Q
    |||||||||| || |||| || || |||||| ||||| ||| | ||| |||  | |||| || ||||||| |||||||||  ||||||||||||| ||||    
T  6036799 aattttgttggttcaaagggagatgatattacacaaatattaaaaatatatcaaatttaatgacaattatggataaattttacttcttaaaactcaatag 6036898  T
Q  442 cactcatcttttacaaata---aatagttagcttttattttcttcg 484  Q
       ||| |||||| |||||   | || |||||||||||||||||||    
T  6036899 agttcaacttttataaataactactatttagcttttattttcttcg 6036944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 294 - 415
Target Start/End: Complemental strand, 34821253 - 34821131
Alignment:
Q  294 agttttatatatagctaccccattaatatattatttgcctactccaaacaattttgttgatttaaagagatattatattaaca-aaaattgataatctat 392  Q
    |||||| ||| ||||||||||||| |||||||| |||  |||||||||||||||||||| |||||||||  |  || |||  | || |||||||||||||    
T  34821253 agttttgtatgtagctaccccattgatatattacttgattactccaaacaattttgttggtttaaagagggacgatgttagtataatattgataatctat 34821154  T
Q  393 ttagtttagtgtcaattatagat 415  Q
    |||||| ||||||||||||||||    
T  34821153 ttagttaagtgtcaattatagat 34821131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 261 - 421
Target Start/End: Complemental strand, 27705544 - 27705385
Alignment:
Q  261 ccaaaagaaataaattcttgaataacaagtctaagttttatatatagctaccccattaatatattatttgcctactccaaacaattttgttgatttaaag 360  Q
    |||||||||| ||| ||||||||||  | | ||| |||||||| || ||||||| ||||||| |||||||  |||| ||||||||||||||| ||||||     
T  27705544 ccaaaagaaaaaaaatcttgaataattaatataa-ttttatatgtaactaccccgttaatatgttatttgattacttcaaacaattttgttggtttaaa- 27705447  T
Q  361 agatattatattaacaaaa-attgataatctatttagtttagtgtcaattatagataaattt 421  Q
    | | || ||||||| |||| ||||||||||||||||| || || |||||||| |||||||||    
T  27705446 aaaaataatattaaaaaaatattgataatctatttagcttggtatcaattatggataaattt 27705385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 28117231 - 28117280
Alignment:
Q  110 atagatcatgtatataaaatttgacattaatctgaaataatttgatatgt 159  Q
    |||||||||||||||||||||||| ||| |||  |||||| |||||||||    
T  28117231 atagatcatgtatataaaatttgatatttatcgaaaataaattgatatgt 28117280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 147; Significance: 3e-77; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 244 - 482
Target Start/End: Complemental strand, 1101303 - 1101062
Alignment:
Q  244 gggtagcattggctaccccaaaagaaataaat-tcttgaataacaagtctaagttttatatatagctaccccattaatatattatttgcctactccaaac 342  Q
    |||||||||||||||||||| |||||| |||  ||||||||||  ||  ||| |||||||||||||| |||||||||||||||||||| |||||||||||    
T  1101303 gggtagcattggctaccccagaagaaaaaaaaatcttgaataattagcataaattttatatatagctcccccattaatatattatttggctactccaaac 1101204  T
Q  343 aattttgttgatttaaagagatattatattaacaaaaattgataatctatttagtttagtgtcaattatagataaatttgtcttcttaaaactccatagc 442  Q
    ||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||     
T  1101203 aatttagttggttcaaagagatattatattaacaaaaattgataatctatttagtttagtgtcaactatagataaatttgtcttcttaaaactcaataga 1101104  T
Q  443 actcatcttttacaaataa--atagttagcttttattttctt 482  Q
     ||||||||||||||||||  || | ||||||||||||||||    
T  1101103 gctcatcttttacaaataactattggtagcttttattttctt 1101062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 303 - 433
Target Start/End: Original strand, 55250445 - 55250576
Alignment:
Q  303 tatagctaccccattaatatattatttgcctactccaaacaattttgttgatttaaagagatattatattaacaaaa-attgataatctatttagtttag 401  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||||| || ||||||  || || |||| |||| ||||||||||||||||||||||    
T  55250445 tatagctaccccattaatatattatttgactacttcaaacaattttgttggttcaaagagggataatgttaataaaatattgataatctatttagtttag 55250544  T
Q  402 tgtcaattatagataaatttgtcttcttaaaa 433  Q
    ||||||||||||||||||||| ||||||||||    
T  55250545 tgtcaattatagataaatttgacttcttaaaa 55250576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 241 - 435
Target Start/End: Complemental strand, 47669129 - 47668932
Alignment:
Q  241 atggggtagcattggctaccccaaaagaa---ataaattcttgaataacaagtctaagttttatatatagctaccccattaatatattatttgcctactc 337  Q
    ||||||||||| |||||||||||||||||   | |||  |||||| ||  ||| || ||||| ||||| |||||||||||||||||||||||| ||||||    
T  47669129 atggggtagcaatggctaccccaaaagaagaaaaaaaaacttgaaaaaatagtata-gttttgtatatggctaccccattaatatattatttgactactc 47669031  T
Q  338 caaacaattttgttgatttaaagagatattatattaacaaaa-attgataatctatttagtttagtgtcaattatagataaatttgtcttcttaaaact 435  Q
    | ||||||||||||| ||||||||   || || |||| |||| |||||||||||||||| ||||||||||||||||||||||||||  |||||||||||    
T  47669030 cgaacaattttgttggtttaaagatggataatgttaataaaatattgataatctatttaatttagtgtcaattatagataaatttgatttcttaaaact 47668932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 306 - 441
Target Start/End: Original strand, 1838565 - 1838701
Alignment:
Q  306 agctaccccattaatatattatttgcctactccaaacaattttgttgatttaaagagatattatatta-acaaaaattgataatctatttagtttagtgt 404  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||  | || |||| || ||| || | ||| ||||||||| |||||| |||| |||    
T  1838565 agctactccattaatatattatttgactactccaaacaattttgttggatcaatgagagatgataatacataaatattgataatatatttactttaatgt 1838664  T
Q  405 caattatagataaatttgtcttcttaaaactccatag 441  Q
     || ||| |||||||||  ||||||||| ||||||||    
T  1838665 taactatggataaattttacttcttaaacctccatag 1838701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 332 - 484
Target Start/End: Complemental strand, 20447895 - 20447741
Alignment:
Q  332 ctactccaaacaattttgttgatttaaagagatattatattaacaaaaattgataatctatttagtttagtgtcaattatagataaatttgtcttcttaa 431  Q
    |||||| ||||||||||||||||| ||||||  || || |||| ||||  |||| |||||||||  ||||||||||||| ||||||||||| |||||||     
T  20447895 ctactctaaacaattttgttgattgaaagagggatgatgttaataaaatatgatgatctatttaagttagtgtcaattaaagataaatttgacttcttac 20447796  T
Q  432 aactccatagcactcatcttttacaaataa--atagttagcttttattttcttcg 484  Q
    |||  |||||  |||| |||||| ||||||  || ||||| ||||| ||||||||    
T  20447795 aacatcatagagctcaacttttataaataattattgttagattttagtttcttcg 20447741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 431
Target Start/End: Complemental strand, 20991523 - 20991334
Alignment:
Q  241 atggggtagcattggctaccccaaaagaaata-aattcttgaataacaagtctaagttttatatatagctaccccattaatatattatttgcctactcca 339  Q
    |||||||||||||  ||||||||||||||| | || ||||||||||  ||  ||  ||||||||  |||| || ||||||| || | |||| ||||||||    
T  20991523 atggggtagcattatctaccccaaaagaaaaacaaatcttgaataagtagcatagtttttatatgcagctgcctcattaatgta-tgtttggctactcca 20991425  T
Q  340 aacaattttgttgatttaaagagatattat-attaacaaaaattgataatctatttagtttagtgtcaattatagataaatttgtcttcttaa 431  Q
    | ||||||||||  ||  ||||||| | || ||||| ||| |||||||||||||||||  ||| ||||| ||| |||||||||| ||||||||    
T  20991424 agcaattttgtttgttcgaagagatgtaataattaaaaaatattgataatctatttag--tagagtcaactatggataaatttgacttcttaa 20991334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 436
Target Start/End: Complemental strand, 29857547 - 29857426
Alignment:
Q  316 ttaatatattatttgcctactccaaacaattttgttgatttaaagagatattatattaacaaaa-attgataatctatttagtttagtgtcaattataga 414  Q
    |||| ||||||| || | |||||||| |||||||||| || ||| ||| || ||  ||  |||| ||||||||||||||||||||||||| |||||| ||    
T  29857547 ttaagatattatctggccactccaaataattttgttggttaaaacagagatgattctataaaaatattgataatctatttagtttagtgttaattatgga 29857448  T
Q  415 taaatttgtcttcttaaaactc 436  Q
    |||| ||| ||||| |||||||    
T  29857447 taaaattgacttctaaaaactc 29857426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 422
Target Start/End: Original strand, 35466411 - 35466530
Alignment:
Q  305 tagctaccccattaatatattatttgcctactccaaacaattttgttgatttaaagagatattatattaacaaaaat--tgataatctatttagtttagt 402  Q
    ||||||| |||||||||||||| |||  || | ||||| ||||||||| |||||||| | || || || |  |||||  | |||||||||||||||||||    
T  35466411 tagctactccattaatatattacttgattatttcaaacgattttgttggtttaaagaaagatgatttttaataaaatacttataatctatttagtttagt 35466510  T
Q  403 gtcaattatagataaatttg 422  Q
    |||||||| | |||||||||    
T  35466511 gtcaattagaaataaatttg 35466530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 439
Target Start/End: Original strand, 46964013 - 46964093
Alignment:
Q  359 agagatattatattaacaaaaat--tgataatctatttagtttagtgtcaattatagataaatttgtcttcttaaaactccat 439  Q
    |||||||| ||||||| ||||||  ||||||| ||||||||  || ||||||||| |||||||||| ||||||||||||||||    
T  46964013 agagatataatattaaaaaaaatattgataatttatttagt--agagtcaattatggataaatttgacttcttaaaactccat 46964093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 366
Target Start/End: Original strand, 46963758 - 46963827
Alignment:
Q  296 ttttatatatagctaccccattaatatattatttgcctactccaaacaattttgttgatttaaagagatat 366  Q
    ||||||||  ||||| ||||||||||||| ||||| ||||||||||||||||| ||| || ||||||||||    
T  46963758 ttttatatgcagctatcccattaatatat-atttggctactccaaacaattttattggttcaaagagatat 46963827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 363
Target Start/End: Complemental strand, 34028165 - 34028097
Alignment:
Q  294 agttttatatatagctaccccattaatatattatttgcctactccaaacaattttgttgatttaaagaga 363  Q
    |||||||||| || |||||| |||||||||| ||||| ||||| ||||||||||||| | || |||||||    
T  34028165 agttttatatgtaactaccctattaatatat-atttgactacttcaaacaattttgtgggttcaaagaga 34028097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 227 - 461
Target Start/End: Complemental strand, 12885 - 12650
Alignment:
Q  227 agggcttcatagggatggggtagcattggctaccccaaaagaaataaat-tcttgaataacaagtctaagttttatatatagctaccccattaatatatt 325  Q
    ||||||||| |||||||||||||||||||||| ||||| ||||| |||  ||||||||||| ||  ||||||| ||||||||||||||||| ||||||||    
T  12885 agggcttcaaagggatggggtagcattggctatcccaagagaaaaaaaaatcttgaataactagcataagtttaatatatagctaccccatgaatatatt 12786  T
Q  326 atttgcctactccaaacaattttgttgatttaaagagatattatattaacaaaaattgataatctatttagtttagtgtcaattatagataaatttgtct 425  Q
    ||||  ||||||||||||||||||||| || |||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| |||||||||||||    
T  12785 attttgctactccaaacaattttgttggttcaaagagatattatattaataaaaattgatattctatttagtttagtgtcaagtatggataaatttgtct 12686  T
Q  426 tcttaaaactccatagcactcatcttttacaaataa 461  Q
    ||||||||||||||||  ||||| ||||||||||||    
T  12685 tcttaaaactccatagagctcattttttacaaataa 12650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 218 - 484
Target Start/End: Original strand, 7093437 - 7093709
Alignment:
Q  218 caggggcggagggcttcatagggatggggtagcattggctaccccaaaag----aaataaattcttgaataacaagtctaagttttatatatagctaccc 313  Q
    |||||||| |||||||||  |  |||||||||||||| ||||||||||||    ||| ||| |||| || ||| ||  || ||||||||  ||| |||||    
T  7093437 caggggcgaagggcttcaatgcaatggggtagcattgcctaccccaaaaggaaaaaaaaaaatctttaacaactagcata-gttttatacgtagataccc 7093535  T
Q  314 cattaatatattatttgcctactccaaacaattttgttgatttaaagagatattatattaacaaaaattgataatctatttagtttagtgtcaattatag 413  Q
    |||||||||||||||   ||||||||||||||||||||| || ||| ||| || |||| || ||| | |||||||||||||||||||||||||||||| |    
T  7093536 cattaatatattattgaactactccaaacaattttgttggttcaaacagagatgatatcaagaaataatgataatctatttagtttagtgtcaattattg 7093635  T
Q  414 ataaatttgtcttcttaaaactccatagcactcatc-ttttacaaataa--atagttagcttttattttcttcg 484  Q
    ||||||||||||||||||||||||| || ||| ||| ||||||||||||  || ||| ||||||||||||||||    
T  7093636 ataaatttgtcttcttaaaactccaaagaacttatcattttacaaataactattgtttgcttttattttcttcg 7093709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 295 - 461
Target Start/End: Complemental strand, 44508386 - 44508219
Alignment:
Q  295 gttttatatatagctaccccattaatatattatttgcctactccaaacaattttgttgatttaaagagatattatattaacaaaa-attgataatctatt 393  Q
    ||||| ||| |||||| ||||||||| |||||||   ||||| ||||||||||| ||| |||||||||  || || |||| |||| ||||||||||||||    
T  44508386 gttttgtatttagctatcccattaatgtattattcagctacttcaaacaattttattggtttaaagagggatgatgttaataaaatattgataatctatt 44508287  T
Q  394 tagtttagtgtcaattatagataaatttgtcttcttaaaactccatagcactcatcttttacaaataa 461  Q
    || |||||||||||||||||||||||||| ||||||||||||  ||||  |||| |||||| ||||||    
T  44508286 taatttagtgtcaattatagataaatttgacttcttaaaactttatagagctcaacttttataaataa 44508219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 297 - 440
Target Start/End: Original strand, 15962297 - 15962441
Alignment:
Q  297 tttatatatagctaccccattaatatattatttgcctactccaaacaattttgttgatttaaagagatattatatt-aacaaaaattgataatctattta 395  Q
    ||||||| |||||||| |||||||||||||||||  |||||||| ||||||||||| ||||||| || |  |||||  ||||| ||| ||||| ||||||    
T  15962297 tttatatgtagctacctcattaatatattatttggttactccaatcaattttgttggtttaaagggagaagatattgcacaaatattcataatatattta 15962396  T
Q  396 gtttagtgtcaattatagataaatttgtcttcttaaaactccata 440  Q
    |||||||||||||||| |||| ||||   |||||| |||||||||    
T  15962397 gtttagtgtcaattatggatacatttaagttcttacaactccata 15962441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 242 - 482
Target Start/End: Complemental strand, 31067306 - 31067062
Alignment:
Q  242 tggggtagcattggctaccccaaaaga--aataaattcttgaataacaagtctaagttttatatatagctaccccat--taatatattatttgcctactc 337  Q
    |||||||||||||||||||||||||||  || ||| |||||||||   |  || || | ||||||||||||||||||  ||| |||||||||| | ||||    
T  31067306 tggggtagcattggctaccccaaaagagaaaaaaaatcttgaatatttaa-cttaggtatatatatagctaccccatattaagatattatttggccactc 31067208  T
Q  338 caaacaattttgttgatttaaagagatattatattaacaaaa-attgataatctatttagtttagtgtcaattatagataaatttgtcttcttaaaactc 436  Q
     |||||||||| ||| || ||| ||| || ||||||  |||| |||||||||| ||||| ||||||||||||||| |||  ||||| ||||| |||||||    
T  31067207 taaacaattttattggttaaaacagagataatattataaaaacattgataatcaatttaatttagtgtcaattatggat--atttgacttctaaaaactc 31067110  T
Q  437 catagcactcatcttttacaaataa--atagttagcttttattttctt 482  Q
    | |||  |||| |||||| ||||||  || ||||| ||||||||||||    
T  31067109 cttagagctcaacttttaaaaataattattgttagtttttattttctt 31067062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 15826496 - 15826455
Alignment:
Q  118 tgtatataaaatttgacattaatctgaaataatttgatatgt 159  Q
    ||||||||||||||||||||||||  |||| |||||||||||    
T  15826496 tgtatataaaatttgacattaatcataaattatttgatatgt 15826455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 484
Target Start/End: Original strand, 41335963 - 41336058
Alignment:
Q  391 atttagtttagtgtcaattatagataaatttgtcttcttaaaactccatagcactcatcttttacaaataa--atagttagcttttattttcttcg 484  Q
    |||||||||||||||||||||| |||||||||  || |||||| | |||||   ||| |||||| | ||||  || ||||| ||||||||||||||    
T  41335963 atttagtttagtgtcaattataaataaatttgatttgttaaaagttcatagagttcaacttttatacataattattgttagattttattttcttcg 41336058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 307 - 435
Target Start/End: Original strand, 39650412 - 39650541
Alignment:
Q  307 gctaccccattaatatattatttgcctactccaaacaattttgttgatttaaagagatattatattaacaaaa-attgataatctatttagtttagtgtc 405  Q
    |||| ||||||||||||||| ||| ||||||||||||||||||||| |||||||||  || ||||||| |||| |||||||||||||||| ||||| |||    
T  39650412 gctatcccattaatatattacttggctactccaaacaattttgttggtttaaagagggataatattaataaaatattgataatctatttaatttagcgtc 39650511  T
Q  406 aattatagataaatttgtcttcttaaaact 435  Q
    |||||||||| |||||| ||||||||||||    
T  39650512 aattatagatgaatttgacttcttaaaact 39650541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 241 - 420
Target Start/End: Complemental strand, 45483987 - 45483804
Alignment:
Q  241 atggggtagcattggctaccccaaaagaaataaat--tcttgaataaca-agtctaagttttatatatagctaccccattaatatattatttgcctactc 337  Q
    ||||||||||||| |||||||||||||||| |||   ||||||||||   ||| || ||||| ||| ||||||||||||| |||||||||||| ||||||    
T  45483987 atggggtagcatttgctaccccaaaagaaaaaaaaaatcttgaataatgtagtata-gttttgtatgtagctaccccattgatatattatttggctactc 45483889  T
Q  338 caaacaa-ttttgttgatttaaagagatattatattaacaaaa-attgataatctatttagtttagtgtcaattatagataaatt 420  Q
    ||||||| |||||||| |||||||||  || |||| || |||| || |||||||||||||||||||| |||||||||||||||||    
T  45483888 caaacaatttttgttggtttaaagagggatgatatcaataaaatatagataatctatttagtttagtatcaattatagataaatt 45483804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 241 - 461
Target Start/End: Complemental strand, 33088086 - 33087866
Alignment:
Q  241 atggggtagcattggctaccccaaaagaaataaattcttgaataaca-agtctaagttttatatatagctaccccattaatatattatttgcctactcca 339  Q
    |||| |||| ||||| ||||| |||||||| ||| ||||||||||   ||| || ||||||||||||| || | ||||||||||||||||| || || ||    
T  33088086 atggagtagaattggttaccctaaaagaaaaaaaatcttgaataatttagttta-gttttatatatagttatctcattaatatattatttggcttcttca 33087988  T
Q  340 aacaattttgttgatttaaagagatattatattaacaaaa-attgataatctatttagtttagtgtcaattatagataaatttgtcttcttaaaactcca 438  Q
    ||||||||||||  || |||||    | ||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||    
T  33087987 aacaattttgttagttcaaagaagggtgatattaataaaatattgataatctatttagtttagtgtcaattatagataaa-ttgacttcttaaaacttca 33087889  T
Q  439 tagcactcatcttttacaaataa 461  Q
    ||   |||| |||||| ||||||    
T  33087888 taaagctcaacttttataaataa 33087866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 297 - 421
Target Start/End: Original strand, 26445913 - 26446037
Alignment:
Q  297 tttatatatagctaccccattaatatattatttgcctactccaaacaattttgttgatttaaagagatattatatt-aacaaaaattgataatctattta 395  Q
    ||||||| |||||||| |||||||||||||| || ||||||||||||||||||||| |||||| ||| | ||||||  ||||| ||||||||| ||||||    
T  26445913 tttatatgtagctacctcattaatatattatctggctactccaaacaattttgttggtttaaaaagaga-tatattgcacaaatattgataatatattta 26446011  T
Q  396 gtttagtgtcaattatagataaattt 421  Q
    |||| ||||||||||| |||||||||    
T  26446012 gtttggtgtcaattatggataaattt 26446037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 312 - 482
Target Start/End: Complemental strand, 46091958 - 46091784
Alignment:
Q  312 cccattaatatattatttgcctactccaaacaattttgttgatttaaagagatattatattaacaaaa-attgataatctatttagtttagtgtcaatta 410  Q
    |||||||| |||||||||| ||||||||||||||||| ||| || ||| | | || ||||||  |||| |||||||||| |||||||||||||| |||||    
T  46091958 cccattaagatattatttggctactccaaacaattttattggttaaaacatagataatattataaaaatattgataatccatttagtttagtgttaatta 46091859  T
Q  411 tagataaatttgtcttcttaaaactccatagcactcatcttttacaaataa--atagttagc-ttttattttctt 482  Q
    | |||||||||| ||||| || ||||| |||  |||| | |||| ||||||  || |||||| ||||||||||||    
T  46091858 tggataaatttgacttctaaatactccttagagctcaacatttataaataactattgttagctttttattttctt 46091784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 312 - 421
Target Start/End: Original strand, 570950 - 571062
Alignment:
Q  312 cccattaatatattatttgcctactccaaacaattttgttgatttaaagagatattatatt---aacaaaaattgataatctatttagtttagtgtcaat 408  Q
    ||||||||||||||||||| |||||||||| |||||||||| |||||||||| || |||||    | | | ||||||||| |||||||| ||||||||||    
T  570950 cccattaatatattatttggctactccaaataattttgttggtttaaagagagatgatattgcataaatatattgataatatatttagtctagtgtcaat 571049  T
Q  409 tatagataaattt 421  Q
    ||| |||||||||    
T  571050 tatggataaattt 571062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 340 - 433
Target Start/End: Original strand, 28521495 - 28521589
Alignment:
Q  340 aacaattttgttgatttaaagagatattatattaacaaaa-attgataatctatttagtttagtgtcaattatagataaatttgtcttcttaaaa 433  Q
    ||||||||||||| |||||||||| || ||||||  | || ||||||||||||||||||||||| ||||||||  ||||||||| ||||||||||    
T  28521495 aacaattttgttggtttaaagagagataatattataataatattgataatctatttagtttagtatcaattatgaataaatttgacttcttaaaa 28521589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 483
Target Start/End: Complemental strand, 28146938 - 28146763
Alignment:
Q  314 cattaatatattatttgcctactccaaacaattttgtt-gatttaaagagatattatattaacaaaa-attgataatctatttagtttagtgtcaattat 411  Q
    |||||||||||| ||||  ||| ||||||||||||||| | || ||||||| ||  | |||| |||| ||||||| |||| |||||||||||||||||||    
T  28146938 cattaatatattgtttgattacgccaaacaattttgtttggttcaaagagagatgctcttaaaaaaatattgatattctaattagtttagtgtcaattat 28146839  T
Q  412 agataaatttgtcttcttaaaactcc--atagcactcatcttttacaaataa--atagttagcttttattttcttc 483  Q
     ||||| |||| ||||| |||||| |  |||| |||||  ||||| | ||||  || |||||||||||||||||||    
T  28146838 ggataactttgacttctgaaaacttcatatagaactcaaattttatagataactattgttagcttttattttcttc 28146763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 483
Target Start/End: Complemental strand, 28050808 - 28050706
Alignment:
Q  383 gataatctatttagtttagtgtcaattatagataaatttgtcttcttaaaactccatagcactcatcttttacaaataa--atagttagcttttattttc 480  Q
    |||||||||||||||||| |||| |||||||||||||||   |||||||| || ||||| ||||| |||||| | ||||  || | ||||||||||||||    
T  28050808 gataatctatttagtttaatgtctattatagataaatttaatttcttaaatcttcatagaactcaacttttatagataactattggtagcttttattttc 28050709  T
Q  481 ttc 483  Q
    |||    
T  28050708 ttc 28050706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 241 - 440
Target Start/End: Original strand, 29790508 - 29790706
Alignment:
Q  241 atggggtagcattggctaccccaaaagaaata-aattcttgaataacaagtctaagttttatatatagctaccccattaatatattatttgcctactcca 339  Q
    |||||||||||||||||||||||||||||| | || ||||| ||||  ||| || |||||  || |||||||| ||||||||||||||||| | ||||||    
T  29790508 atggggtagcattggctaccccaaaagaaaaataaatcttgtataattagtata-gttttgaatgtagctaccacattaatatattatttggccactcca 29790606  T
Q  340 aacaattttgttgatttaaagagatattatattaacaaaaattgataatctatttagtttagtgtcaattatagataaatttgtcttcttaaaactccat 439  Q
    ||||||||||||| |||||| ||| || || |||| ||| | | |||||||||||||| ||||||||||||||  |||||||| ||| |||||||| |||    
T  29790607 aacaattttgttggtttaaaaagagatgattttaa-aaatacttataatctatttagtctagtgtcaattataagtaaatttgacttgttaaaacttcat 29790705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 297 - 421
Target Start/End: Complemental strand, 35952092 - 35951967
Alignment:
Q  297 tttatatatagctaccccattaatatattatttgcctactccaaacaattttgttgatttaaagagatattatatt-aacaaaaattgataatctattta 395  Q
    ||||||| || |||| ||||| |||||||||||| ||||||||||||||||||||| |||||| ||| || ||||| |||||| ||||||||| ||||||    
T  35952092 tttatatgtaactactccattgatatattatttggctactccaaacaattttgttggtttaaaaagagatgatattgaacaaatattgataatatattta 35951993  T
Q  396 gtttagtgtcaattatagataaattt 421  Q
    |||||||||||||||| |||||||||    
T  35951992 gtttagtgtcaattatggataaattt 35951967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 216 - 461
Target Start/End: Complemental strand, 15471322 - 15471076
Alignment:
Q  216 tccaggggcggagggcttcatagggatggggtagcattggctaccccaaaagaaataaat-tcttgaataacaagtctaagttttatatatagctacccc 314  Q
    |||| ||||| | ||||||||| | |||||||| ||||||||||||||||||||| |||  |||| ||||   | | || || | |||| |||||||| |    
T  15471322 tccacgggcgaaaggcttcataagcatggggtaacattggctaccccaaaagaaaaaaaaatcttcaatatttaatttaggtat-atatgtagctacctc 15471224  T
Q  315 attaatatattatttgcctactccaaacaattttgttgatttaaagagatattatattaacaaaa-attgataatctatttagtttagtgtcaattatag 413  Q
    || || ||||||||||  |||||||||||||||||||| || ||| ||| || ||| ||  |||| |||||||||||||||||||||||||||||||| |    
T  15471223 atcaaaatattatttggttactccaaacaattttgttggttaaaacagagatgataatacaaaaatattgataatctatttagtttagtgtcaattatgg 15471124  T
Q  414 ataaatttgtcttcttaaaactccatagcactcatcttttacaaataa 461  Q
    |||||||||  |||| |||||||  |||  |||| |||||| ||||||    
T  15471123 ataaatttgaattctaaaaactcattagagctcaacttttataaataa 15471076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 299 - 482
Target Start/End: Complemental strand, 14145051 - 14144862
Alignment:
Q  299 tatatatagctaccccattaatatattatttgcctactccaaacaattttgttgatttaaagagatattatattaacaaaa-attgataatctatttagt 397  Q
    ||||| |||||||| |||||| |||||||||| | |||||||| |||||||||| || ||| | | || ||||||  |||| ||||||||||||||||||    
T  14145051 tatatgtagctacctcattaagatattatttgaccactccaaataattttgttggttaaaacatagatgatattataaaaatattgataatctatttagt 14144952  T
Q  398 ttagtgtc---aattatagataaatttgtcttcttaaaactccatagcactcatcttttacaaataa--atagttagcttttattttctt 482  Q
    ||||||||   |||||| |||||||||| | ||| |||||||| |||  || | |||||| ||||||  || ||||||||||||||||||    
T  14144951 ttagtgtcaataattatggataaatttgacctctaaaaactccttagagcttaacttttataaataagtattgttagcttttattttctt 14144862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 297 - 440
Target Start/End: Complemental strand, 33140469 - 33140327
Alignment:
Q  297 tttatatatagctaccccattaatatattatttgcctactccaaacaattttgttgatttaaagagatattatatt-aacaaaaattgataatctattta 395  Q
    ||||||| ||| || ||||||||||||||||||| ||||||||||||||||| ||| |||||||||| || |||||  ||||  || |||||| ||||||    
T  33140469 tttatatgtagttatcccattaatatattatttggctactccaaacaattttattggtttaaagagagatgatattgcacaagtatcgataatatattta 33140370  T
Q  396 gtttagtgtcaattatagataaatttgtcttcttaaaactccata 440  Q
    |  ||||||||||||| |||||||||   |||||| |||||||||    
T  33140369 g--tagtgtcaattatggataaatttaagttcttacaactccata 33140327  T

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Target: scaffold0258 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 241 - 433
Target Start/End: Complemental strand, 18302 - 18108
Alignment:
Q  241 atggggtagcattggctaccccaaaagaaataaatt--cttgaataacaagtctaagttttatatatagctaccccattaatatattatttgcctactcc 338  Q
    |||||||||||||||||| | | ||||||  ||| |  ||| |||||| ||| ||| ||| |||| |||||||| ||||||||||||||||| |||||||    
T  18302 atggggtagcattggctagctcgaaagaagaaaaataacttaaataactagtataa-tttgatatgtagctacctcattaatatattatttgtctactcc 18204  T
Q  339 aaacaattttgttgatttaaagagatattatatta-acaaaaattgataatctatttagtttagtgtcaattatagataaatttgtcttcttaaaa 433  Q
    ||| |||||||||| |||||||  | || |||||| ||||| ||| ||||| ||||||||||| |||||||||||||| |||||  ||||||||||    
T  18203 aaataattttgttggtttaaaggaagatgatattacacaaatattaataatatatttagtttattgtcaattatagatgaattttacttcttaaaa 18108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 241 - 482
Target Start/End: Original strand, 270176 - 270420
Alignment:
Q  241 atggggtagcattggctaccccaaaagaa--ataaattcttgaataacaagtctaagttttatatatagctaccccattaatatattatttgcctactcc 338  Q
    |||||||||||||||||||||||||||||  | ||| |||||||||   |  || || | ||||| || |||||||||||| |||||||||| ||||| |    
T  270176 atggggtagcattggctaccccaaaagaagaagaaaatcttgaatatttaa-cttaggtatatatgtaactaccccattaagatattatttggctacttc 270274  T
Q  339 aaacaattttgttgatttaaagagatattatattaacaaaa-attgataatctatttagtttagtgtcaattatagataaatttgtcttcttaaaactcc 437  Q
    |||||||||  ||| || ||| ||| || ||||||  |||| |||||||||||| |||||||||||||||||||| ||||||||| ||| | ||||||||    
T  270275 aaacaattta-ttggttaaaacagagatgatattataaaaatattgataatctacttagtttagtgtcaattataaataaatttgacttttaaaaactcc 270373  T
Q  438 atagcactcatcttttacaaataa--atagttagcttttattttctt 482  Q
     |||  |||| |||||| ||||||  ||  |||||||||||||||||    
T  270374 ttagagctcaacttttataaataactatttttagcttttattttctt 270420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 294 - 433
Target Start/End: Complemental strand, 16625 - 16484
Alignment:
Q  294 agttttatatatagctaccccattaatatattatttgcctactccaaacaattttgttgatttaaagagatattatattaacaaaa--attgataatcta 391  Q
    |||||||||| | ||||  |||||||| ||||||||   |||||||||||||||||||| |||||||||  || ||||||| ||||  ||||||||| ||    
T  16625 agttttatatgtggctattccattaatgtattatttaattactccaaacaattttgttggtttaaagagggatgatattaaaaaaaatattgataattta 16526  T
Q  392 tttagtttagtgtcaattatagataaatttgtcttcttaaaa 433  Q
    ||||||||||| |||||| | ||||||| || ||||||||||    
T  16525 tttagtttagtatcaattgtggataaatctgacttcttaaaa 16484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 296 - 461
Target Start/End: Original strand, 4017039 - 4017205
Alignment:
Q  296 ttttatatatagctaccccattaatatattatttgcctactccaaacaattttgttgatttaaagagatattatattaacaaaa-attgataatctattt 394  Q
    |||||||| ||||||||||||| | |||||||||  | ||| ||||||||||||||  || || |||| || ||||||| || | |||  ||||||||||    
T  4017039 ttttatatgtagctaccccattcaaatattatttaacaacttcaaacaattttgttagttcaaggagagatgatattaaaaatacatttgtaatctattt 4017138  T
Q  395 agtttagtgtcaattatagataaatttgtcttcttaaaactccatagcactcatcttttacaaataa 461  Q
    |||||||||| ||||||  ||||||||| ||||| ||||||| |||| ||||| |||||| ||||||    
T  4017139 agtttagtgttaattatgaataaatttgacttctgaaaactcgatagaactcaacttttataaataa 4017205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 229 - 440
Target Start/End: Complemental strand, 13325747 - 13325535
Alignment:
Q  229 ggcttcatagggatggggtagcattggctaccccaaaagaa--ataaattcttgaataacaagtctaagttttatatatagctaccccattaatatatta 326  Q
    ||||||||||  |||| |||||||| |||| ||||||||||  | |||  |||||||||    | |||| ||||||| ||||||||| ||||||||||||    
T  13325747 ggcttcatagccatggagtagcattagctatcccaaaagaagaaaaaaaacttgaataattgatataaggtttatatgtagctaccc-attaatatatta 13325649  T
Q  327 tttgcctactccaaacaattttgttgatttaaagagatattatattaacaaaaattgataatctatttagtttagtgtcaattatagataaatttgtctt 426  Q
    ||||  ||||   |||||||||| || |||||||||| || ||||  ||||| | | ||||| ||||||||||||||| ||||||||||||||||   ||    
T  13325648 tttggttacttttaacaattttgatggtttaaagagagatgatatgcacaaataataataatatatttagtttagtgtaaattatagataaatttaagtt 13325549  T
Q  427 cttaaaactccata 440  Q
    |||| |||||||||    
T  13325548 cttataactccata 13325535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 422
Target Start/End: Original strand, 20921404 - 20921440
Alignment:
Q  386 aatctatttagtttagtgtcaattatagataaatttg 422  Q
    ||||||||||||||||||||||||||| |||||||||    
T  20921404 aatctatttagtttagtgtcaattataaataaatttg 20921440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 270
Target Start/End: Original strand, 20921257 - 20921286
Alignment:
Q  241 atggggtagcattggctaccccaaaagaaa 270  Q
    ||||||||||||||||||||||||||||||    
T  20921257 atggggtagcattggctaccccaaaagaaa 20921286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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