View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7113_low_16 (Length: 448)
Name: NF7113_low_16
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7113_low_16 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 13 - 448
Target Start/End: Original strand, 10201451 - 10201888
Alignment:
| Q |
13 |
aatatcttcatctagtaataaa-ttatgattaacaaattaaatgacataaccaaattataactaacaaaaataatggcaa-gggtaagaggacgaaattc |
110 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
10201451 |
aatatcttcatctagtaataaaattatgattaacaaattaaatgacataaccaaattataactaacaaaaataatggcaaagggcaagaggacgaaattc |
10201550 |
T |
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| Q |
111 |
atagaatgaagaataaatgaaatgcaacttcaatttggtactgtcacacctttccatttgagagccaattcacatatttgctttgttgaagacccatttt |
210 |
Q |
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| T |
10201551 |
attgaaagaagaataaatgaaatgcaacttcaatttggtattgtcacacctttccatttgagagctaattcacatatttgctttgttgaagacccatttt |
10201650 |
T |
|
| Q |
211 |
ccttaagagcattaatagctgcgtctttgagatccttcattctataacgaatcttttgctcttcctctcctaccattaacctcttcacaacacttgcaat |
310 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10201651 |
cctttagagcattaatagctgcttctttgagatccttcattctataacgaatcttttgctcttcctctcctaccattaacctcttcacaacacttgcaat |
10201750 |
T |
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| Q |
311 |
ttcttccctttgaaccaacccattttcaccaactttaggtctaatagccactttaacattttcactcaataaaacagcattcatcttttgctcagcatag |
410 |
Q |
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| T |
10201751 |
ttcttccctttgaaccaacccattttcaccaactttaggtctaatagccactttaacattttcactcaataaaacagcattcatcttttgctcagcatag |
10201850 |
T |
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| Q |
411 |
agtggccatgcaatcaaaggcacaccattcaccacact |
448 |
Q |
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| T |
10201851 |
agtggccatgcaatcaaaggcacaccattcaccacact |
10201888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 13 - 448
Target Start/End: Original strand, 10208524 - 10208961
Alignment:
| Q |
13 |
aatatcttcatctagtaataaa-ttatgattaacaaattaaatgacataaccaaattataactaacaaaaataatggcaa-gggtaagaggacgaaattc |
110 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
10208524 |
aatatcttcatctagtaataaaattatgattaacaaattaaatgacataaccaaattataactaacaaaaataatggcaaagggcaagaggacgaaattc |
10208623 |
T |
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| Q |
111 |
atagaatgaagaataaatgaaatgcaacttcaatttggtactgtcacacctttccatttgagagccaattcacatatttgctttgttgaagacccatttt |
210 |
Q |
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| T |
10208624 |
attgaaagaagaataaatgaaatgcaacttcaatttggtattgtcacacctttccatttgagagctaattcacatatttgctttgttgaagacccatttt |
10208723 |
T |
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| Q |
211 |
ccttaagagcattaatagctgcgtctttgagatccttcattctataacgaatcttttgctcttcctctcctaccattaacctcttcacaacacttgcaat |
310 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10208724 |
cctttagagcattaatagctgcttctttgagatccttcattctataacgaatcttttgctcttcctctcctaccattaacctcttcacaacacttgcaat |
10208823 |
T |
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| Q |
311 |
ttcttccctttgaaccaacccattttcaccaactttaggtctaatagccactttaacattttcactcaataaaacagcattcatcttttgctcagcatag |
410 |
Q |
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| T |
10208824 |
ttcttccctttgaaccaacccattttcaccaactttaggtctaatagccactttaacattttcactcaataaaacagcattcatcttttgctcagcatag |
10208923 |
T |
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| Q |
411 |
agtggccatgcaatcaaaggcacaccattcaccacact |
448 |
Q |
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| T |
10208924 |
agtggccatgcaatcaaaggcacaccattcaccacact |
10208961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 448
Target Start/End: Original strand, 894426 - 894487
Alignment:
| Q |
387 |
gcattcatcttttgctcagcatagagtggccatgcaatcaaaggcacaccattcaccacact |
448 |
Q |
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| T |
894426 |
gcattcatcctttgttcagcaaatagaggccatgcaatcataggcacaccattaaccacact |
894487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 341 - 421
Target Start/End: Original strand, 844904 - 844984
Alignment:
| Q |
341 |
aactttaggtctaatagccactttaacattttcactcaataaaacagcattcatcttttgctcagcatagagtggccatgc |
421 |
Q |
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| T |
844904 |
aactttaggtctaatagccactttcaaaccatcacttaacaaaactgcattcatcttttgttcagcaaagagtggccatgc |
844984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 421
Target Start/End: Original strand, 870188 - 870268
Alignment:
| Q |
341 |
aactttaggtctaatagccactttaacattttcactcaataaaacagcattcatcttttgctcagcatagagtggccatgc |
421 |
Q |
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| T |
870188 |
aactttaggtctaatagccactttcaaaccatcacttaacaaagctgcattcatcttttgttcagcaaagagtggccatgc |
870268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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