View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7113_low_18 (Length: 430)

Name: NF7113_low_18
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7113_low_18
NF7113_low_18
[»] chr5 (10 HSPs)
chr5 (16-415)||(26708135-26708533)
chr5 (16-415)||(26977869-26978267)
chr5 (214-281)||(25860202-25860269)
chr5 (304-404)||(37193189-37193290)
chr5 (213-273)||(7032935-7032995)
chr5 (213-281)||(29069500-29069568)
chr5 (49-123)||(29272430-29272503)
chr5 (198-280)||(41249479-41249561)
chr5 (354-400)||(41249606-41249652)
chr5 (297-404)||(29069405-29069513)
[»] chr4 (7 HSPs)
chr4 (42-197)||(27065877-27066034)
chr4 (42-197)||(27086980-27087137)
chr4 (43-149)||(6662009-6662115)
chr4 (16-144)||(43290307-43290437)
chr4 (198-281)||(22433593-22433676)
chr4 (354-403)||(22433722-22433771)
chr4 (213-271)||(9591545-9591603)
[»] chr3 (15 HSPs)
chr3 (16-130)||(53834973-53835089)
chr3 (198-282)||(22604482-22604566)
chr3 (52-155)||(7138632-7138736)
chr3 (213-281)||(50093661-50093729)
chr3 (16-140)||(14656358-14656483)
chr3 (213-281)||(54378403-54378471)
chr3 (195-281)||(11559861-11559947)
chr3 (195-281)||(11569130-11569216)
chr3 (297-404)||(11559767-11559874)
chr3 (297-404)||(11569036-11569143)
chr3 (241-281)||(54783835-54783875)
chr3 (205-279)||(25745760-25745834)
chr3 (304-400)||(50093570-50093667)
chr3 (324-404)||(54378312-54378393)
chr3 (365-404)||(22604419-22604458)
[»] chr8 (9 HSPs)
chr8 (190-281)||(15075267-15075358)
chr8 (196-268)||(2751466-2751538)
chr8 (198-282)||(4975618-4975702)
chr8 (213-281)||(20990947-20991015)
chr8 (217-272)||(25380549-25380604)
chr8 (196-272)||(13322365-13322441)
chr8 (365-404)||(4975367-4975406)
chr8 (365-403)||(2751586-2751624)
chr8 (312-392)||(20990862-20990943)
[»] chr2 (9 HSPs)
chr2 (42-120)||(10945597-10945675)
chr2 (48-120)||(10939734-10939806)
chr2 (198-282)||(30870129-30870213)
chr2 (194-281)||(34214489-34214576)
chr2 (218-281)||(8907826-8907889)
chr2 (198-281)||(29454489-29454572)
chr2 (238-280)||(17354200-17354242)
chr2 (354-404)||(29454353-29454403)
chr2 (365-404)||(30870244-30870283)
[»] chr1 (12 HSPs)
chr1 (16-178)||(24188377-24188539)
chr1 (25-120)||(49389193-49389288)
chr1 (198-282)||(25878814-25878898)
chr1 (214-281)||(33372305-33372372)
chr1 (354-404)||(10917799-10917849)
chr1 (213-271)||(28007599-28007657)
chr1 (312-404)||(28007492-28007585)
chr1 (210-280)||(30936713-30936779)
chr1 (238-281)||(10917711-10917754)
chr1 (365-404)||(25878744-25878783)
chr1 (201-279)||(32990700-32990778)
chr1 (354-400)||(33372417-33372462)
[»] chr6 (4 HSPs)
chr6 (48-120)||(24043263-24043335)
chr6 (18-123)||(18812520-18812624)
chr6 (201-280)||(292450-292527)
chr6 (379-407)||(292382-292410)
[»] chr7 (4 HSPs)
chr7 (25-116)||(13817476-13817567)
chr7 (16-83)||(32354088-32354155)
chr7 (210-277)||(42594551-42594618)
chr7 (213-273)||(23429148-23429208)


Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 415
Target Start/End: Original strand, 26708135 - 26708533
Alignment:
Q  16 aatatgtcacaaataatttaatgtgaatctcaatatatatctcatgagtttaacaagtgccacaaaaatatattcaggtctacttagattatttctaagc 115  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26708135 aatatgtcacaaataatttaatatgaatctcaatatgtatctcatgagtttaacaagtgccacaaaaatatattcagatctacttagattatttctaagc 26708234  T
Q  116 gacaacatctctattacacttgtttcactaatgcatatcacatatttaccttcatgagcttcttaaatcaagtttacacatgcaggcacgaattcaatgt 215  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  26708235 gacaacatctctcttacacttgttttactaatgcatatcacatatttagcttcatgagcttcttaaatcaagtttacacatgcaggcacggaatcaatgt 26708334  T
Q  216 gggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaatctaaaattaannnnnnnngacggattaaccaaaaattaaatat 315  Q
    | |||||||||| ||||| || ||||||||||||| |||||||||||||||||||||||||||||||         | ||||||||||||||||||||||    
T  26708335 gagggcaatggggtcaagtgaccccacttgcctcctcttgtgtattgtatttttaatctaaaattaattttttttta-ggattaaccaaaaattaaatat 26708433  T
Q  316 atgtctactttgaccccctttatattgaattattgcactcacatagtctatttattaaactacaaaaaattacaaaattaagaaggatcttagagcatat 415  Q
    ||||||| ||||| ||||||||||  | ||||||| |||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  26708434 atgtctagtttgatcccctttataaagtattattgtactcacatagtctacttattacactacaaaaaattacaaaactaagaaggatcttagagcatat 26708533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 415
Target Start/End: Original strand, 26977869 - 26978267
Alignment:
Q  16 aatatgtcacaaataatttaatgtgaatctcaatatatatctcatgagtttaacaagtgccacaaaaatatattcaggtctacttagattatttctaagc 115  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26977869 aatatgtcacaaataatttaatatgaatctcaatatgtatctcatgagtttaacaagtgccacaaaaatatattcagatctacttagattatttctaagc 26977968  T
Q  116 gacaacatctctattacacttgtttcactaatgcatatcacatatttaccttcatgagcttcttaaatcaagtttacacatgcaggcacgaattcaatgt 215  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  26977969 gacaacatctctcttacacttgttttactaatgcatatcacatatttagcttcatgagcttcttaaatcaagtttacacatgcaggcacggaatcaatgt 26978068  T
Q  216 gggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaatctaaaattaannnnnnnngacggattaaccaaaaattaaatat 315  Q
    | |||||||||| ||||| || ||||||||||||| |||||||||||||||||||||||||||||||         | ||||||||||||||||||||||    
T  26978069 gagggcaatggggtcaagtgaccccacttgcctcctcttgtgtattgtatttttaatctaaaattaattttttttta-ggattaaccaaaaattaaatat 26978167  T
Q  316 atgtctactttgaccccctttatattgaattattgcactcacatagtctatttattaaactacaaaaaattacaaaattaagaaggatcttagagcatat 415  Q
    ||||||| ||||| ||||||||||  | ||||||| |||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  26978168 atgtctagtttgatcccctttataaagtattattgtactcacatagtctacttattacactacaaaaaattacaaaactaagaaggatcttagagcatat 26978267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 214 - 281
Target Start/End: Complemental strand, 25860269 - 25860202
Alignment:
Q  214 gtgggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaatctaaaatta 281  Q
    |||||||||||||| |||| |||  |||||| ||||||||||||||||||||||||||||||||||||    
T  25860269 gtgggggcaatggggtcaaccgactccacttccctccacttgtgtattgtatttttaatctaaaatta 25860202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 304 - 404
Target Start/End: Complemental strand, 37193290 - 37193189
Alignment:
Q  304 aaaattaaatatatgtctactttgacccc-ctttatattgaattattgcactcacatagtctatttattaaactacaaaaaattacaaaattaagaagga 402  Q
    ||||||| | |||| |||| ||||||||| |||||||| | |||||||   ||||| |||||||||||||||||||||||||||| |||| |||||||||    
T  37193290 aaaattataaatatatctagtttgacccctctttatatagtattattgtcttcacacagtctatttattaaactacaaaaaattataaaactaagaagga 37193191  T
Q  403 tc 404  Q
    ||    
T  37193190 tc 37193189  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 7032995 - 7032935
Alignment:
Q  213 tgtgggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaatc 273  Q
    ||||||||||||||| |||| ||| ||||||||||||||||||| ||||||||||||||||    
T  7032995 tgtgggggcaatggggtcaaccgaccccacttgcctccacttgtttattgtatttttaatc 7032935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 29069568 - 29069500
Alignment:
Q  213 tgtgggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaatctaaaatta 281  Q
    ||||||||||||||| |||||||| ||||||||||||||| || ||||||||||||||| | |||||||    
T  29069568 tgtgggggcaatggggtcaagcgaccccacttgcctccacatgggtattgtatttttaacccaaaatta 29069500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 29272503 - 29272430
Alignment:
Q  49 tatatatctcatgagtttaacaagtgccacaaaaatatattcaggtctacttagattatttctaagcgacaacat 123  Q
    ||||||||||||||||||||| ||| |||||||| ||||||||||||| |||| |||| || |||||||||||||    
T  29272503 tatatatctcatgagtttaacgagtaccacaaaa-tatattcaggtctgcttaaattaattttaagcgacaacat 29272430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 198 - 280
Target Start/End: Original strand, 41249479 - 41249561
Alignment:
Q  198 caggcacgaattcaatgtgggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaatctaaaatt 280  Q
    |||||||| ||  ||||||||| ||||||| ||||| || ||||||||||||||| |||||||||||||||||| | ||||||    
T  41249479 caggcacggatctaatgtggggacaatggggtcaagtgaccccacttgcctccacatgtgtattgtatttttaacccaaaatt 41249561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 41249606 - 41249652
Alignment:
Q  354 tcacatagtctatttattaaactacaaaaaattacaaaattaagaag 400  Q
    ||||||||||||||||||| | || ||||||||||||||||||||||    
T  41249606 tcacatagtctatttattacattaaaaaaaattacaaaattaagaag 41249652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 404
Target Start/End: Complemental strand, 29069513 - 29069405
Alignment:
Q  297 ttaaccaaaaattaaatatatgtctactttgacccc-ctttatattgaattattgcactcacatagtctatttattaaactacaaaaaattacaaaatta 395  Q
    |||||| ||||||| |||||| | || ||||||| | |||||||| | |||||||   ||||| | | ||||||||| |||||||||||||| |||| ||    
T  29069513 ttaacccaaaattagatatatatttagtttgacctctctttatatagtattattgtcttcacacaatttatttattacactacaaaaaattataaaacta 29069414  T
Q  396 agaaggatc 404  Q
    |||||||||    
T  29069413 agaaggatc 29069405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 42 - 197
Target Start/End: Complemental strand, 27066034 - 27065877
Alignment:
Q  42 atctcaatatatatctcatgagtttaacaagtgccacaaaaatatattcaggtctacttagattatttctaagcgacaacatctctattacacttgtttc 141  Q
    ||||||||||||||||||| |||||| |||||| ||||| ||||| |||| ||||||||| |||| || |||| |||||||| |||||||||||||||||    
T  27066034 atctcaatatatatctcataagtttagcaagtgacacaacaatatgttcaagtctacttaaattaattttaagtgacaacatttctattacacttgtttc 27065935  T
Q  142 actaatgcatatc--acatatttaccttcatgagcttcttaaatcaagtttacacatg 197  Q
    ||| ||||||| |  | |||||||| |||||||| ||||||||||||| || ||||||    
T  27065934 actcatgcataccatatatatttacattcatgagtttcttaaatcaagcttgcacatg 27065877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 42 - 197
Target Start/End: Complemental strand, 27087137 - 27086980
Alignment:
Q  42 atctcaatatatatctcatgagtttaacaagtgccacaaaaatatattcaggtctacttagattatttctaagcgacaacatctctattacacttgtttc 141  Q
    ||||||||||||||||||| |||||| |||||| ||||| ||||| |||| ||||||||| |||| || |||| |||||||| |||||||||||||||||    
T  27087137 atctcaatatatatctcataagtttagcaagtgacacaacaatatgttcaagtctacttaaattaattttaagtgacaacatttctattacacttgtttc 27087038  T
Q  142 actaatgcatatc--acatatttaccttcatgagcttcttaaatcaagtttacacatg 197  Q
    ||| ||||||| |  | |||||||| |||||||| ||||||||||||| || ||||||    
T  27087037 actcatgcataccatatatatttacattcatgagtttcttaaatcaagcttgcacatg 27086980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 43 - 149
Target Start/End: Original strand, 6662009 - 6662115
Alignment:
Q  43 tctcaatatatatctcatgagtttaacaagtgccacaaaaatatattcaggtctacttagattatttctaagcgacaacatctctattacacttgtttca 142  Q
    |||||||||||| ||||||| ||||||||||||  ||| |||||||||||||||||||| ||||||||||| |||||||||||  |||||||||||||||    
T  6662009 tctcaatatataactcatgaatttaacaagtgcagcaataatatattcaggtctacttatattatttctaaacgacaacatcttaattacacttgtttca 6662108  T
Q  143 ctaatgc 149  Q
    |||||||    
T  6662109 ctaatgc 6662115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 43290437 - 43290307
Alignment:
Q  16 aatatgtcacaaataatttaatgtgaatctcaatatatatctcatgagtttaacaagtgccac--aaaaatatattcaggtctacttagattatttctaa 113  Q
    |||||||||| |||| ||||| ||| |||||||||||||||||||||||||| ||||| ||||  |||||||||| || |||  |||| |||| || |||    
T  43290437 aatatgtcaccaatattttaaggtgtatctcaatatatatctcatgagtttatcaagtaccacaaaaaaatatatacatgtccgcttaaattacttttaa 43290338  T
Q  114 gcgacaacatctctattacacttgtttcact 144  Q
    |||||||||||| |||| | ||| |||||||    
T  43290337 gcgacaacatctatattgcccttatttcact 43290307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 198 - 281
Target Start/End: Original strand, 22433593 - 22433676
Alignment:
Q  198 caggcacgaattcaatgtgggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaatctaaaatta 281  Q
    |||||||| || | |||||||||||||||| |||||||| ||||||||||||||| ||| |||||||||||||| | |||||||    
T  22433593 caggcacggataccatgtgggggcaatggggtcaagcgaccccacttgcctccacctgtttattgtatttttaacccaaaatta 22433676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 22433722 - 22433771
Alignment:
Q  354 tcacatagtctatttattaaactacaaaaaattacaaaattaagaaggat 403  Q
    |||| |||||||||||||| ||||||||||||||||||| ||||||||||    
T  22433722 tcacctagtctatttattacactacaaaaaattacaaaactaagaaggat 22433771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 9591545 - 9591603
Alignment:
Q  213 tgtgggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaa 271  Q
    ||||||||||||||| |||| | | ||||||||||||||||||  ||||||||||||||    
T  9591545 tgtgggggcaatggggtcaaccaaccccacttgcctccacttgcttattgtatttttaa 9591603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 53834973 - 53835089
Alignment:
Q  16 aatatgtcacaaataatttaatgtgaatctcaat--atatatctcatgagtttaacaagtgccacaaaaatatattcaggtctacttagattatttctaa 113  Q
    |||||||||| |||| ||||| ||||||||||||  ||||||||||| |||||||||||||||||||||||||||| || ||| ||||||||||| ||||    
T  53834973 aatatgtcaccaatattttaaggtgaatctcaatgtatatatctcattagtttaacaagtgccacaaaaatatatttagatctgcttagattattcctaa 53835072  T
Q  114 gcgacaacatctctatt 130  Q
    |||||||||||||||||    
T  53835073 gcgacaacatctctatt 53835089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 198 - 282
Target Start/End: Complemental strand, 22604566 - 22604482
Alignment:
Q  198 caggcacgaattcaatgtgggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaatctaaaattaa 282  Q
    ||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||| | ||||||||    
T  22604566 caggcacgaatacaatgtgggggcaatggggtcaagcgaccccacttgcctccacttgtgtattgcatttttaacccaaaattaa 22604482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 52 - 155
Target Start/End: Original strand, 7138632 - 7138736
Alignment:
Q  52 atatctcatgagtttaacaagtgccacaaaaatatattcaggtctacttagattatttctaagcgacaac-atctctattacacttgtttcactaatgca 150  Q
    ||||||||||||||||| ||||||||||||||||||  ||  |||||||||||||||| ||| ||| ||| ||||||||| | ||||||||||| |||||    
T  7138632 atatctcatgagtttaataagtgccacaaaaatatacacatatctacttagattatttttaaacgataacaatctctattgctcttgtttcacttatgca 7138731  T
Q  151 tatca 155  Q
    |||||    
T  7138732 tatca 7138736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 50093729 - 50093661
Alignment:
Q  213 tgtgggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaatctaaaatta 281  Q
    ||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||| |||||||    
T  50093729 tgtgggggcaatggggtcaagcgaccccacttgcctccacatgtgtattgtatttttaatccaaaatta 50093661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 14656483 - 14656358
Alignment:
Q  16 aatatgtcacaaataatttaatgtgaatctcaatatatatctc--atgagtttaacaagtgccacaaaaatatattcaggtctacttagattatttctaa 113  Q
    |||||||||| |||| | ||| ||| |||||||||||||| ||  ||||||||| |||| |||| ||||  |||| || |||||||||||||||||||||    
T  14656483 aatatgtcaccaatattataaagtgtatctcaatatatatatcttatgagtttatcaagagccataaaac-atatacacgtctacttagattatttctaa 14656385  T
Q  114 gcgacaacatctctattacacttgttt 140  Q
    |||||||||| ||||| ||||||||||    
T  14656384 gcgacaacatgtctatcacacttgttt 14656358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 54378471 - 54378403
Alignment:
Q  213 tgtgggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaatctaaaatta 281  Q
    ||||||| ||||||| |||||||| ||||||||||||||| |||||||||||||||||| | |||||||    
T  54378471 tgtggggacaatggggtcaagcgaccccacttgcctccacatgtgtattgtatttttaacccaaaatta 54378403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 195 - 281
Target Start/End: Complemental strand, 11559947 - 11559861
Alignment:
Q  195 atgcaggcacgaattcaatgtgggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaatctaaaatta 281  Q
    ||||||||||| ||  | |||| ||||||| || |||||||| ||||||| ||||||| |||||||||||||||||| | |||||||    
T  11559947 atgcaggcacggatctagtgtgtgggcaatcgggtcaagcgaccccacttacctccacatgtgtattgtatttttaacccaaaatta 11559861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 195 - 281
Target Start/End: Complemental strand, 11569216 - 11569130
Alignment:
Q  195 atgcaggcacgaattcaatgtgggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaatctaaaatta 281  Q
    ||||||||||| ||  | |||| ||||||| || |||||||| ||||||| ||||||| |||||||||||||||||| | |||||||    
T  11569216 atgcaggcacggatctagtgtgtgggcaatcgggtcaagcgaccccacttacctccacatgtgtattgtatttttaacccaaaatta 11569130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 404
Target Start/End: Complemental strand, 11559874 - 11559767
Alignment:
Q  297 ttaaccaaaaattaaatatatgtctactttgacccc-ctttatattgaattattgcactcacatagtctatttattaaactacaaaaaattacaaaatta 395  Q
    |||||| ||||||| |||||| |||| |||||| || |||| ||| | |||||||   ||||||||||||||||||| ||| | ||||||| ||||||||    
T  11559874 ttaacccaaaattagatatatatctagtttgacacctctttgtatagtattattgtcttcacatagtctatttattacact-ccaaaaatttcaaaatta 11559776  T
Q  396 agaaggatc 404  Q
    |||||||||    
T  11559775 agaaggatc 11559767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 404
Target Start/End: Complemental strand, 11569143 - 11569036
Alignment:
Q  297 ttaaccaaaaattaaatatatgtctactttgacccc-ctttatattgaattattgcactcacatagtctatttattaaactacaaaaaattacaaaatta 395  Q
    |||||| ||||||| |||||| |||| |||||| || |||| ||| | |||||||   ||||||||||||||||||| ||| | ||||||| ||||||||    
T  11569143 ttaacccaaaattagatatatatctagtttgacacctctttgtatagtattattgtcttcacatagtctatttattacact-ccaaaaatttcaaaatta 11569045  T
Q  396 agaaggatc 404  Q
    |||||||||    
T  11569044 agaaggatc 11569036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 54783875 - 54783835
Alignment:
Q  241 acttgcctccacttgtgtattgtatttttaatctaaaatta 281  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  54783875 acttgcctccacttgtttattgtatttttaatctaaaatta 54783835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 279
Target Start/End: Original strand, 25745760 - 25745834
Alignment:
Q  205 gaattcaatgtgggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaatctaaaat 279  Q
    |||||||||| |||||||||||| | |  ||| ||| ||||||||||||||  |||||||||||||| |||||||    
T  25745760 gaattcaatgcgggggcaatggggttagtcgacccctcttgcctccacttggttattgtatttttaacctaaaat 25745834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 400
Target Start/End: Complemental strand, 50093667 - 50093570
Alignment:
Q  304 aaaattaaatatatgtctactttgacccc-ctttatattgaattattgcactcacatagtctatttattaaactacaaaaaattacaaaattaagaag 400  Q
    ||||||| |||||| |||| ||||||| | |||||||| | |||||||   ||||| | ||||||||||| |||||||||||||| |||| |||||||    
T  50093667 aaaattagatatatatctagtttgaccactctttatatagtattattgtcttcacacattctatttattacactacaaaaaattataaaactaagaag 50093570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 404
Target Start/End: Complemental strand, 54378393 - 54378312
Alignment:
Q  324 tttgacccc-ctttatattgaattattgcactcacatagtctatttattaaactacaaaaaattacaaaattaagaaggatc 404  Q
    ||||||||| |||||||| | |||||||   | ||||||||||||||||| | || |||||||||||||| |||||||||||    
T  54378393 tttgacccctctttatatagtattattgtttttacatagtctatttattacattataaaaaattacaaaactaagaaggatc 54378312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 404
Target Start/End: Complemental strand, 22604458 - 22604419
Alignment:
Q  365 atttattaaactacaaaaaattacaaaattaagaaggatc 404  Q
    |||||||| ||||||||||||||||||| |||||||||||    
T  22604458 atttattacactacaaaaaattacaaaactaagaaggatc 22604419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 190 - 281
Target Start/End: Original strand, 15075267 - 15075358
Alignment:
Q  190 tacacatgcaggcacgaattcaatgtgggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaatctaaaatta 281  Q
    |||||||||||||||| || |||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||| | |||||||    
T  15075267 tacacatgcaggcacggatacaatgtgggggcaatggggtcaagcgaccccacttgcctccacttgtgtattgcatttttaacccaaaatta 15075358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 2751466 - 2751538
Alignment:
Q  196 tgcaggcacgaattcaatgtgggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttt 268  Q
    |||||||| | || |||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||    
T  2751466 tgcaggcatggatacaatgtgggggcaatggggtcaagcgaccccacttgcctccacctgtgtattgtatttt 2751538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 198 - 282
Target Start/End: Complemental strand, 4975702 - 4975618
Alignment:
Q  198 caggcacgaattcaatgtgggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaatctaaaattaa 282  Q
    |||||||| || |||| ||||||||||||| |||||||| ||||||||  |||||||||||||||||||||||| | ||||||||    
T  4975702 caggcacggatacaatatgggggcaatggggtcaagcgaccccacttgtatccacttgtgtattgtatttttaacccaaaattaa 4975618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 20991015 - 20990947
Alignment:
Q  213 tgtgggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaatctaaaatta 281  Q
    ||||||||||| ||| |||||||| ||||||||||||||| ||||||||||| |||||||  |||||||    
T  20991015 tgtgggggcaacggggtcaagcgaccccacttgcctccacatgtgtattgtacttttaatgcaaaatta 20990947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 25380549 - 25380604
Alignment:
Q  217 ggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaat 272  Q
    ||||||||||||| |  |||||||||||||||||||| ||||||||||||||||||    
T  25380549 ggggcaatgggataagccgatcccacttgcctccactcgtgtattgtatttttaat 25380604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 272
Target Start/End: Original strand, 13322365 - 13322441
Alignment:
Q  196 tgcaggcacgaattcaatgtgggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaat 272  Q
    |||| |||| |||||||||||  ||||||||||| || ||| | ||||| |||||| |||| |||||||||||||||    
T  13322365 tgcatgcacaaattcaatgtgtaggcaatgggatgaaccgaccacacttacctccatttgtttattgtatttttaat 13322441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 404
Target Start/End: Complemental strand, 4975406 - 4975367
Alignment:
Q  365 atttattaaactacaaaaaattacaaaattaagaaggatc 404  Q
    |||||||| ||||||||||||||||||| |||||||||||    
T  4975406 atttattatactacaaaaaattacaaaactaagaaggatc 4975367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 403
Target Start/End: Original strand, 2751586 - 2751624
Alignment:
Q  365 atttattaaactacaaaaaattacaaaattaagaaggat 403  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  2751586 atttattacactacaaaaaattacaaaactaagaaggat 2751624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 392
Target Start/End: Complemental strand, 20990943 - 20990862
Alignment:
Q  312 atatatgtctactttgacccc-ctttatattgaattattgcactcacatagtctatttattaaactacaaaaaattacaaaa 392  Q
    |||||| |||| ||||||||| ||||||||   |||||||   ||| ||||||||||||||| |||| ||||||||||||||    
T  20990943 atatatatctaatttgacccctctttatatcatattattgtcttcaaatagtctatttattacactataaaaaattacaaaa 20990862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 10945597 - 10945675
Alignment:
Q  42 atctcaatatatatctcatgagtttaacaagtgccacaaaaatatattcaggtctacttagattatttctaagcgacaa 120  Q
    |||| |||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10945597 atcttaatatatatctcttgagtttagcaagtgccacaaaattatattcaggtctacttagattatttctaagcgacaa 10945675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 10939734 - 10939806
Alignment:
Q  48 atatatatctcatgagtttaacaagtgccacaaaaatatattcaggtctacttagattatttctaagcgacaa 120  Q
    ||||||||||| |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  10939734 atatatatctcttgagtttagcaagtgccacaaaattatattcagatctacttagattatttctaagcgacaa 10939806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 198 - 282
Target Start/End: Original strand, 30870129 - 30870213
Alignment:
Q  198 caggcacgaattcaatgtgggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaatctaaaattaa 282  Q
    |||||||| || |||||||||||||||||| ||||| || ||||||||||| ||||||||||||| |||||||| | ||||||||    
T  30870129 caggcacggatacaatgtgggggcaatggggtcaagtgaccccacttgccttcacttgtgtattgcatttttaacccaaaattaa 30870213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 194 - 281
Target Start/End: Complemental strand, 34214576 - 34214489
Alignment:
Q  194 catgcaggcacgaattcaatgtgggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaatctaaaatta 281  Q
    |||||||| ||| || || ||||||||||||||| |||| ||| ||||||||||||||||||  ||||||||||||||| ||||||||    
T  34214576 catgcagggacggatgcagtgtgggggcaatggggtcaaccgaccccacttgcctccacttgcttattgtatttttaatataaaatta 34214489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 281
Target Start/End: Original strand, 8907826 - 8907889
Alignment:
Q  218 gggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaatctaaaatta 281  Q
    |||||||||| |||||||| ||||||||||||||| ||||||||| |||||||| | |||||||    
T  8907826 gggcaatggggtcaagcgaccccacttgcctccacatgtgtattgaatttttaacccaaaatta 8907889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 281
Target Start/End: Complemental strand, 29454572 - 29454489
Alignment:
Q  198 caggcacgaattcaatgtgggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaatctaaaatta 281  Q
    |||||||||||  | |||||| |||||||| |||||||| ||||||||||| ||  |||||||||||||||||| | |||||||    
T  29454572 caggcacgaatctagtgtgggagcaatggggtcaagcgaccccacttgccttcaaatgtgtattgtatttttaacccaaaatta 29454489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 280
Target Start/End: Complemental strand, 17354242 - 17354200
Alignment:
Q  238 cccacttgcctccacttgtgtattgtatttttaatctaaaatt 280  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  17354242 cccacttgcctccacttgtttattgtatttttaatctaaaatt 17354200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 404
Target Start/End: Complemental strand, 29454403 - 29454353
Alignment:
Q  354 tcacatagtctatttattaaactacaaaaaattacaaaattaagaaggatc 404  Q
    |||||| || ||||||||| ||||||||||||||||||| |||||||||||    
T  29454403 tcacattgtttatttattacactacaaaaaattacaaaactaagaaggatc 29454353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 404
Target Start/End: Original strand, 30870244 - 30870283
Alignment:
Q  365 atttattaaactacaaaaaattacaaaattaagaaggatc 404  Q
    |||||||| ||||||||||||||||||| |||||||||||    
T  30870244 atttattacactacaaaaaattacaaaactaagaaggatc 30870283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 24188539 - 24188377
Alignment:
Q  16 aatatgtcacaaataatttaatgtgaatctcaatatatatctcatgagtttaacaagtgccacaaaaatatattcaggtctacttagattatttctaagc 115  Q
    ||||||| || |||| ||||| ||| |||| ||||||||||||||||||||| |||||||||||||||||||| || |||  |||| ||||  | |||||    
T  24188539 aatatgtaaccaatattttaaggtgtatctaaatatatatctcatgagtttatcaagtgccacaaaaatatatacaagtcctcttaaattaactttaagc 24188440  T
Q  116 gacaacatctctattacacttgtttcactaatgcatatcacatatttaccttcatgagcttct 178  Q
    ||||| ||||||||| ||||||||  |||||| ||||||| |||| ||  |||||||| ||||    
T  24188439 gacaaaatctctatttcacttgttagactaatacatatcatatatgtattttcatgagtttct 24188377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 49389193 - 49389288
Alignment:
Q  25 caaataatttaatgtgaatctcaatatatatctcatgagtttaacaagtgccacaaaaatatattcaggtctacttagattatttctaagcgacaa 120  Q
    |||||| ||||  ||| |||| |||||||||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  49389193 caaatattttacggtgtatcttaatatatatctcttgagtttagcaagtgccacaaaattatattcaagtctacttagattatttctaagcgacaa 49389288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 198 - 282
Target Start/End: Complemental strand, 25878898 - 25878814
Alignment:
Q  198 caggcacgaattcaatgtgggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaatctaaaattaa 282  Q
    |||||||| || ||||||||| |||||||| |||||||| ||||||||||||||||||| ||||| |||||||| | ||||||||    
T  25878898 caggcacggatacaatgtgggagcaatggggtcaagcgaccccacttgcctccacttgtatattgcatttttaacccaaaattaa 25878814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 214 - 281
Target Start/End: Original strand, 33372305 - 33372372
Alignment:
Q  214 gtgggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaatctaaaatta 281  Q
    |||||||||||||| |||||||| ||||||||||||||| ||||||||||||||| || | |||||||    
T  33372305 gtgggggcaatggggtcaagcgaccccacttgcctccacatgtgtattgtattttcaacccaaaatta 33372372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 404
Target Start/End: Original strand, 10917799 - 10917849
Alignment:
Q  354 tcacatagtctatttattaaactacaaaaaattacaaaattaagaaggatc 404  Q
    ||||||||||||||||||| |||||||||||||| |||| || ||||||||    
T  10917799 tcacatagtctatttattacactacaaaaaattataaaactaggaaggatc 10917849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 271
Target Start/End: Complemental strand, 28007657 - 28007599
Alignment:
Q  213 tgtgggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaa 271  Q
    ||||||||||||||  |||||| | ||||||||||||||| |||||| |||||||||||    
T  28007657 tgtgggggcaatggagtcaagccaccccacttgcctccacatgtgtactgtatttttaa 28007599  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 404
Target Start/End: Complemental strand, 28007585 - 28007492
Alignment:
Q  312 atatatgtctactttgacccc-ctttatattgaattattgcactcacatagtctatttattaaactacaaaaaattacaaaattaagaaggatc 404  Q
    |||||| |||| |||||| || |||||||| | |||||||   ||||||||||||| ||||| |||| ||||||||| |||| |||||||||||    
T  28007585 atatatatctagtttgactcctctttatatagtattattgtcttcacatagtctatctattacactataaaaaattataaaactaagaaggatc 28007492  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 280
Target Start/End: Original strand, 30936713 - 30936779
Alignment:
Q  210 caatgtgggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaatctaaaatt 280  Q
    |||||||||||||||||  |||| ||| ||||||||||||||||||    |||||||||||| ||||||||    
T  30936713 caatgtgggggcaatggagtcaaccgaccccacttgcctccacttg----ttgtatttttaacctaaaatt 30936779  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 281
Target Start/End: Original strand, 10917711 - 10917754
Alignment:
Q  238 cccacttgcctccacttgtgtattgtatttttaatctaaaatta 281  Q
    ||||||||||||||| |||||||| ||||||||| |||||||||    
T  10917711 cccacttgcctccacatgtgtattatatttttaacctaaaatta 10917754  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 404
Target Start/End: Complemental strand, 25878783 - 25878744
Alignment:
Q  365 atttattaaactacaaaaaattacaaaattaagaaggatc 404  Q
    |||||||| ||||||||||||||||||| |||||||||||    
T  25878783 atttattatactacaaaaaattacaaaactaagaaggatc 25878744  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 32990700 - 32990778
Alignment:
Q  201 gcacgaattcaatgtgggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaatctaaaat 279  Q
    |||| ||||||||||| || ||||||| |||  ||| || |||||||||||||||  |||||| ||||||| |||||||    
T  32990700 gcacaaattcaatgtgaggacaatggggtcacccgaccctacttgcctccacttggttattgtgtttttaacctaaaat 32990778  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 33372417 - 33372462
Alignment:
Q  354 tcacatagtctatttattaaactacaaaaaattacaaaattaagaag 400  Q
    ||||||||||||||||||| ||||| |||||||| ||||||||||||    
T  33372417 tcacatagtctatttattagactac-aaaaattataaaattaagaag 33372462  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 24043263 - 24043335
Alignment:
Q  48 atatatatctcatgagtttaacaagtgccacaaaaatatattcaggtctacttagattatttctaagcgacaa 120  Q
    ||||||||||| |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  24043263 atatatatctcttgagtttagcaagtgccacaaaattatattcagatctacttagattatttctaagcgacaa 24043335  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 18812520 - 18812624
Alignment:
Q  18 tatgtcacaaataatttaatgtgaatctcaat--atatatctcatgagtttaacaagtgccacaaaaatatattcaggtctacttagattatttctaagc 115  Q
    ||||||||  ||| ||||| ||||||||||||  ||||||||||||||||  || |||||||||||| |||||||||||||  ||| |||| || |||||    
T  18812520 tatgtcaccgatattttaaggtgaatctcaatgtatatatctcatgagtt--acgagtgccacaaaa-tatattcaggtctgtttaaattaattttaagc 18812616  T
Q  116 gacaacat 123  Q
    ||||||||    
T  18812617 gacaacat 18812624  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 292527 - 292450
Alignment:
Q  201 gcacgaattcaatgtgggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaatctaaaatt 280  Q
    |||||||| |||||||||| ||||||| ||||  |||||||||||||||| ||||  |||||||||||||| ||||||||    
T  292527 gcacgaatccaatgtgggg-caatggggtcaactgatcccacttgcctcc-cttgcttattgtatttttaacctaaaatt 292450  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 407
Target Start/End: Complemental strand, 292410 - 292382
Alignment:
Q  379 aaaaaattacaaaattaagaaggatctta 407  Q
    |||||||||||||||||||||||||||||    
T  292410 aaaaaattacaaaattaagaaggatctta 292382  T

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Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 13817567 - 13817476
Alignment:
Q  25 caaataatttaatgtgaatctcaatatatatctcatgagtttaacaagtgccacaaaaatatattcaggtctacttagattatttctaagcg 116  Q
    |||||| ||||  ||| |||| |||||||||||| |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||    
T  13817567 caaatattttacagtgtatcttaatatatatctcttgagtttagcaagtgccacaaaattatattcagatctacttagattatttctaagcg 13817476  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 32354088 - 32354155
Alignment:
Q  16 aatatgtcacaaataatttaatgtgaatctcaatatatatctcatgagtttaacaagtgccacaaaaa 83  Q
    |||||||||| |||| ||||| ||| |||||||||||||||||||||||||| ||||| |||||||||    
T  32354088 aatatgtcaccaatattttaaggtgtatctcaatatatatctcatgagtttatcaagtaccacaaaaa 32354155  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 277
Target Start/End: Complemental strand, 42594618 - 42594551
Alignment:
Q  210 caatgtgggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaatctaaa 277  Q
    |||||||| ||||||||| |||| ||| ||||||||||||||||||  |||||||||||||| |||||    
T  42594618 caatgtggtggcaatggggtcaaccgaccccacttgcctccacttgcttattgtatttttaacctaaa 42594551  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 23429208 - 23429148
Alignment:
Q  213 tgtgggggcaatgggatcaagcgatcccacttgcctccacttgtgtattgtatttttaatc 273  Q
    ||||||||||| ||| |||| ||| ||||||||||||||||||  ||||||||||||||||    
T  23429208 tgtgggggcaacggggtcaaccgaccccacttgcctccacttgcttattgtatttttaatc 23429148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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