View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7113_low_24 (Length: 382)
Name: NF7113_low_24
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7113_low_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 52516115 - 52515757
Alignment:
| Q |
1 |
aggaataaaagtactagaatgaaaattggggcagcttcaattgtagaaaagattgtctaatatcagtttgtttgacaacgtacaagtactagtaacaagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
52516115 |
aggaataaaagtactagaatgaaaattggggcagcttcaattgtagaaaagattgtcaaatatcagtttgtttgacaacgtgtaagtactagtaacaagt |
52516016 |
T |
|
| Q |
101 |
ttgtttgacatcatgtaagtactagtaacgagagttgaccagataaaggatattccaatagtcagggtgacaaaagtaagccaaactagtacggagagat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52516015 |
ttgtttgacatcatgtaagtactagtaacgagagttgaccagataaaggatattccattagtcagggtgacaaaagtaagccaaactagtacggagagat |
52515916 |
T |
|
| Q |
201 |
ttagtgataaacgttctacctttaaacttaatataggattgcgaattatagtgctgtttgattcttgcagtcaaccccacctagtggtatagggtttgat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52515915 |
ttagtgataaacgttctacctttaaacttaatataggattgcgaattatagtgctgtttgattcttgcagtcaaccccacctagtggtatagggtttgat |
52515816 |
T |
|
| Q |
301 |
atatgttggtttaaactttgtttttccttgttaaccattctttcttttttggaagtggg |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52515815 |
atatgttggtttaaactttgtttttccttgttaaccattctttcttttttggaagtggg |
52515757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University