View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7113_low_25 (Length: 369)
Name: NF7113_low_25
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7113_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 45695378 - 45695095
Alignment:
| Q |
17 |
aacacattaggtacataaaaatcaaatataaattcatgcagatgaatatacactatacacaacggtcagagaggtgggaacctttgaattcaattataca |
116 |
Q |
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| T |
45695378 |
aacatattaggtacataaaa-tcaaatataaattcatgcagatgaatatacactatacacaacggtcagagaggtgggaacctttgaattcaattataca |
45695280 |
T |
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| Q |
117 |
tgaaagaaaagacactaaccctgtagtattcatggattccaatggttgagtttcaattggagtcacctccacactattttgcagttccttctctttttcc |
216 |
Q |
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| T |
45695279 |
tgaaagaaaagacactaaccctgtagtattcatggattccaatggttgtgtttcaattggagtcacctccacactattttgcagttccttctctttttcc |
45695180 |
T |
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| Q |
217 |
tttatctgcaggttttcactcaaatcattttgtcatgtactgttatattattccaaatccaaacaccatattcggcatagttgtt |
301 |
Q |
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| T |
45695179 |
tttatctgcaggttttcactcaaatcattttgtcatgtactgttatattattccaaatccaaacaccacattcggcatagttgtt |
45695095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 321 - 358
Target Start/End: Complemental strand, 45695075 - 45695038
Alignment:
| Q |
321 |
catcattaccttcttggtgagcatgttgttatattctt |
358 |
Q |
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| T |
45695075 |
catcattaccttcttggtgagcatgttgttatgttctt |
45695038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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