View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7113_low_3 (Length: 687)
Name: NF7113_low_3
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7113_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 546; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 13 - 668
Target Start/End: Complemental strand, 46865788 - 46865131
Alignment:
| Q |
13 |
catcaccaatgaccatgtttccaaaattctgtctgtggagtagaatccttatccagatgaagggtgtttccaagagcacaaaactcaactcagttctcca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46865788 |
catcaccaatgaccatgtttccaaaattctgtctgtggagtagaatccttatccagatgaagggtgtttccaagagcacaaaactcaactcagttctcca |
46865689 |
T |
|
| Q |
113 |
ctgcacttggcaggttgggaagaacaagaagtgaatcatcaatccaatcaccataaacacgattgatcttgtttaatttcaaccaaagtaaatgcatctt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46865688 |
ctgcacttggcaggttgggaagaacaagaagtgaatcatcaatccaatcaccataaacacgattgatcttgtttaatttcaaccaaagtaaatgcatctt |
46865589 |
T |
|
| Q |
213 |
cttagcctgctcctcttcctttgccacaagtcttgcagggaaggtggtaggtgcatatgcatcattggcagaacctgttaaggtttttcgcgaagttgga |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||| |
|
|
| T |
46865588 |
cttagcctgctcctcttcctttgccacaagtcttgcagggaaggtggtaggtgcatatgcatcattgccagaacctgttaaggcttttcgtgaagttgga |
46865489 |
T |
|
| Q |
313 |
atgatagcttttgttgaatttgctattgcaactgcagcttgaatgagtcagaatacgatacatggaaaccaaacagtttaaattgttacaatcatcttgt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46865488 |
ttgatagcttttgttgaatttgctattgcaactgcagcttgaatgagtcagaatacgatacatggaaaccaaacagtttaaattgttacaatcatcttga |
46865389 |
T |
|
| Q |
413 |
attctttgttcacaatatgtgaatacaagtaatcacacccannnnnnnnnnnnnaaggacagtgaccacgaatgttgcagagacgttaaggttttttagt |
512 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
46865388 |
attctttgttcacaatatgtaaatacaagtaatcacacccaatatatatatataaaggacagtgaccacaaatgttgcagagacgttaaggttttttagt |
46865289 |
T |
|
| Q |
513 |
ctctaacactgcagctgcgttaaccatatatgaaaagtagagtatccatcgacacataccaaagtagagtactatccaac-nnnnnnnatatctgaaaag |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
46865288 |
ctctaacactgcagctgcgttaaccatatatgaaaagtagagtatccatcgacacataccaaagtagagtactatccaacttttttttatatctgaaaag |
46865189 |
T |
|
| Q |
612 |
caattttagtacctacttgtgtaaccacgagg-cctaacgaatatttggtatgagtat |
668 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
46865188 |
caattttggtacctacttgtgtaaccacgaggacctaacgaatatttggtacgagtat |
46865131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 56 - 352
Target Start/End: Complemental strand, 46901622 - 46901325
Alignment:
| Q |
56 |
aatccttatccagatgaaggg-tgtttccaagagcacaaaactcaactcagttctccactgcacttggcaggttgggaagaacaagaagtgaatcatcaa |
154 |
Q |
| |
|
||||||||| ||||||| ||| |||||||||||||||||| ||| |||| |||||| |||||| |||| |||||||| |||||| || ||||||||| |
|
|
| T |
46901622 |
aatccttatacagatgagggggtgtttccaagagcacaaagttcacttcaggtctccattgcactaggcaagttgggaaaaacaagtggtcaatcatcaa |
46901523 |
T |
|
| Q |
155 |
tccaatcaccataaacacgattgatcttgtt---taatttcaaccaaagtaaatgcatcttcttagcctgctcctcttcctttgccacaagt---cttgc |
248 |
Q |
| |
|
||||||||||||||| || ||||||||| || ||||||||||| |||||| ||| |||||||| |||||||||| ||||||| || ||| ||||| |
|
|
| T |
46901522 |
tccaatcaccataaataccattgatcttcttgcctaatttcaacctaagtaagtgcttcttcttatcctgctcctcatcctttgtcatgagtagacttgc |
46901423 |
T |
|
| Q |
249 |
agggaaggtggtaggtgcatatgcatcattggcagaacctgttaaggtttttcgcgaagttggaatgatagcttttgttgaatttgctattgcaactgca |
348 |
Q |
| |
|
| |||||| |||| || | |||||||||| ||||||| ||| |||| | |||||||||||||||| ||||||||| ||| |||| ||||||||| |
|
|
| T |
46901422 |
ggtgaaggtagtag-----ta-gaatcattggcaatacctgttgaggcttttggtgaagttggaatgatagattttgttgagtttactatggcaactgca |
46901329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 46874455 - 46874370
Alignment:
| Q |
151 |
tcaatccaatcaccataaacacgattgatcttgtttaatttcaaccaaagtaaatgcatcttcttagcctgctcctcttcctttgc |
236 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| | | |||||||||| ||||| | | ||||||| |||||||||||||||||||| |
|
|
| T |
46874455 |
tcaatccaatcaccgtaaatacgattgatctggctgaatttcaacccaagtatacgtttcttctttgcctgctcctcttcctttgc |
46874370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 357 - 431
Target Start/End: Complemental strand, 46892068 - 46891994
Alignment:
| Q |
357 |
gagtcagaatacgatacatggaaaccaaacagtttaaattgttacaatcatcttgtattctttgttcacaatatg |
431 |
Q |
| |
|
||||||||| | |||||||||||||||||||||| | |||||| |||||||||||| | |||| |||||||||| |
|
|
| T |
46892068 |
gagtcagaacaatatacatggaaaccaaacagtttcatttgttataatcatcttgtactttttgctcacaatatg |
46891994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 259
Target Start/End: Complemental strand, 46892282 - 46892166
Alignment:
| Q |
146 |
aatcatcaatccaatcaccataaacacgattgatcttgtttaatttcaaccaaagtaaatgcatcttcttagcctgctcctcttcctttgccacaagt-- |
243 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||| | | |||||||||| ||||| | | ||||| || | ||||| ||||||||| |||||||| |
|
|
| T |
46892282 |
aatcatcaatccaatcaccgtaaatacgattgatctggctgaatttcaacccaagtatacgtttcttcctaacatgctcttcttccttttccacaagtag |
46892183 |
T |
|
| Q |
244 |
-cttgcagggaaggtgg |
259 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
46892182 |
acttgcaggggaggtgg |
46892166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 357 - 431
Target Start/End: Complemental strand, 46874267 - 46874194
Alignment:
| Q |
357 |
gagtcagaatacgatacatggaaaccaaacagtttaaattgttacaatcatcttgtattctttgttcacaatatg |
431 |
Q |
| |
|
||||||||| | |||||||||||||||| |||| |||||||| |||||||||||| | |||| |||||||||| |
|
|
| T |
46874267 |
gagtcagaacaatatacatggaaaccaaaaagttgcaattgttataatcatcttgtaat-tttgctcacaatatg |
46874194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 2e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 22689866 - 22690090
Alignment:
| Q |
22 |
tgaccatgtttccaaaattct--gtctgtggagtagaatccttatccagatgaaggg-tgtttccaagagcacaaaactcaactcagttctccactgcac |
118 |
Q |
| |
|
|||| |||||||||||||||| ||| | |||| |||||| |||||||||||| ||| ||||||||||||||||||| ||||||||| ||||| |||||| |
|
|
| T |
22689866 |
tgacgatgtttccaaaattctttgtcagcggagaagaatcattatccagatgagggggtgtttccaagagcacaaaattcaactcaggtctcctctgcac |
22689965 |
T |
|
| Q |
119 |
ttggcaggttgggaagaacaagaagtgaatcatcaatccaatcaccataaacacgattg---atcttgtttaatttcaaccaaagtaaatgcatcttctt |
215 |
Q |
| |
|
||||| |||||| |||| |||| |||||||||||||||||||| |||| | | |||| |||||||||||||||||||||||||| || ||||||| |
|
|
| T |
22689966 |
ttggctagttgggtagaataagaggtgaatcatcaatccaatcagcatatatagtattggtcttcttgtttaatttcaaccaaagtaaacgcttcttctt |
22690065 |
T |
|
| Q |
216 |
agcctgctcctcttcctttgccaca |
240 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
22690066 |
agcctgctcctcttcctttgccaca |
22690090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 4e-43; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 56 - 236
Target Start/End: Complemental strand, 19847360 - 19847177
Alignment:
| Q |
56 |
aatccttatccagatgaagggtgtttccaagagcacaaaactcaactcagttctccactgcacttggcaggttgggaagaacaagaagtgaatcatcaat |
155 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||| |||||| || ||||| |||||||||||| |||||||| ||||||| |||||||||||| |
|
|
| T |
19847360 |
aatccttatccagatgaagtgagtttccaagagcacaaaattcaacttagatctcctctgcacttggcaagttgggaaaaacaagagatgaatcatcaat |
19847261 |
T |
|
| Q |
156 |
ccaatcaccataaacacgattgatct---tgtttaatttcaaccaaagtaaatgcatcttcttagcctgctcctcttcctttgc |
236 |
Q |
| |
|
||||||| |||| | | |||||||| ||||||||||| ||||||||||| || |||||||||| |||||| |||||||||| |
|
|
| T |
19847260 |
ccaatcagcatatatagtattgatcttcgtgtttaatttccaccaaagtaaaggcttcttcttagcttgctccacttcctttgc |
19847177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 132 - 357
Target Start/End: Complemental strand, 27301026 - 27300804
Alignment:
| Q |
132 |
aagaacaagaagtgaatcatcaatccaatcaccataaacacgattgatcttgtttaatttcaaccaaagtaaatgcatcttcttagcctgctcctcttcc |
231 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||| | | |||||||||| ||||| | | | ||||| ||||| || |||||| |
|
|
| T |
27301026 |
aagaacaagaagtcgatcatcaatccaatcaccataaatacgattgatctcgctgaatttcaacccaagtatacgttttttctttgcctgttcatcttcc |
27300927 |
T |
|
| Q |
232 |
tttgccacaagt---cttgcagggaaggtggtaggtgcatatgcatcattggcagaacctgttaaggtttttcgcgaagttggaatgatagcttttgttg |
328 |
Q |
| |
|
||| |||||||| ||||| ||| ||||||||| ||||||||||||||||| || |||| || | |||||||||| ||||| ||||||| |
|
|
| T |
27300926 |
ttttccacaagtagacttgccggggaggtggtag------atgcatcattggcagaaactaacaaggcaattggtaaagttggaatcatagcgtttgttg |
27300833 |
T |
|
| Q |
329 |
aatttgctattgcaactgcagcttgaatg |
357 |
Q |
| |
|
|||||||||| ||||||||| ||| |||| |
|
|
| T |
27300832 |
aatttgctatagcaactgcaacttcaatg |
27300804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 83 - 202
Target Start/End: Complemental strand, 27310930 - 27310811
Alignment:
| Q |
83 |
caagagcacaaaactcaactcagttctccactgcacttggcaggttgggaagaacaagaagtgaatcatcaatccaatcaccataaacacgattgatctt |
182 |
Q |
| |
|
||||||||||||| |||||| || |||||| ||||||| ||| || |||||||||||| | |||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
27310930 |
caagagcacaaaattcaactgaggtctccattgcacttagcaactttggaagaacaagagttcaatcatcaattcaatcaccataaatacgattgatctt |
27310831 |
T |
|
| Q |
183 |
gtttaatttcaaccaaagta |
202 |
Q |
| |
|
| | ||||| |||| ||||| |
|
|
| T |
27310830 |
gctgaattttaacccaagta |
27310811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 355 - 413
Target Start/End: Complemental strand, 27300731 - 27300673
Alignment:
| Q |
355 |
atgagtcagaatacgatacatggaaaccaaacagtttaaattgttacaatcatcttgta |
413 |
Q |
| |
|
||||||||||| | |||||||| |||||||| ||||| |||||||| |||||||||||| |
|
|
| T |
27300731 |
atgagtcagaacaagatacatgaaaaccaaatagtttcaattgttataatcatcttgta |
27300673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 243
Target Start/End: Complemental strand, 27310693 - 27310660
Alignment:
| Q |
210 |
cttcttagcctgctcctcttcctttgccacaagt |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
27310693 |
cttcttagcctgctcctcttcctttgccacaagt |
27310660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 27311005 - 27310977
Alignment:
| Q |
13 |
catcaccaatgaccatgtttccaaaattc |
41 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
27311005 |
catcaccaatgaccatgtttccaaaattc |
27310977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 61 - 169
Target Start/End: Complemental strand, 27441188 - 27441080
Alignment:
| Q |
61 |
ttatccagatgaagggtgtttccaagagcacaaaactcaactcagttctccactgcacttggcaggttgggaagaacaagaagtgaatcatcaatccaat |
160 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||| ||| | || ||||||||| |||||||||||||||| | ||||||| ||||||| |
|
|
| T |
27441188 |
ttatccagatgaagggagtttccaagagcacaaaattcaactcatgtcttctcttcacttggcaagttgggaagaacaagagtttaatcatcgatccaat |
27441089 |
T |
|
| Q |
161 |
caccataaa |
169 |
Q |
| |
|
||||||||| |
|
|
| T |
27441088 |
caccataaa |
27441080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University